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...ttgttgatgatgtctttcttaaaaaatatgaacatttacataattatagtaatacaattctgttggcatataactcctaaactaatggagtaaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTATTCAAAGTTGCTCAA
species | Zea mays |
transcript | GRMZM2G022997_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAA GTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTEST: gi|211058621|gb|FL339128.1|FL339128
genomic: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAAgtgagtgatc ... taaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
EST: CCGTTTCGACATTACACAGATCCCAGATGTATATGATTCCTGCAA GTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTEST: gi|51592786|gb|CV071932.1|CV071932
genomic: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAAgtgagtgatc ... taaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
EST: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAA GTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTEST: gi|211197623|gb|FL318610.1|FL318610
genomic: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAAgtgagtgatc ... taaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
EST: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAA GTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTEST: gi|211467194|gb|FL319591.1|FL319591
genomic: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAAgtgagtgatc ... taaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
EST: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAA GTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTEST: gi|211302287|gb|FL347329.1|FL347329
genomic: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAAgtgagtgatc ... taaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
EST: CCGTTTTGACATTACACAGATCCTAGATGTATATGATTCCTGCAA GTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTEST: gi|211459419|gb|FL313798.1|FL313798
genomic: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAAgtgagtgatc ... taaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
EST: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAA GTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
genomic: CCGTTTTGACATTACACAGATCCCAGATGTATATGATTCCTGCAAgtgagtgatc ... taaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCT
atagtaatacaattctgttggcatataactcctaaactaatggagtaaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTATTCAAAGTTGCTCAA
aactaat putative branch site (score: 77)
aatacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgatgatgtctttcttaaaaaatatgaacatttacataattatagtaatacaattctgttggcatataactcctaaactaatggagtaaattgcagGTATGACCTTTTGCATAATGCTCATCTCAATCTTAAGGGTTTGGAAGAGCTATTCAAAGTTGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
-tgttgat
- - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa