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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagcctatcttgcttcttcctcctgtttatatcatgctgagtaatcatgctgacttgtttcttctcttcattgttggtgtattcttgctaatcttcagTTGTCCATTTTGTCGGAAG

Basic information

species Zea mays
transcript GRMZM2G022866_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32940976|gb|CF045795.1|CF045795
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|149026606|gb|EE046030.2|EE046030
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|76014575|gb|DT941745.1|DT941745
EST:     GAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|78079812|gb|DV508224.1|DV508224
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|56462040|gb|CK986338.1|CK986338
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|71442261|gb|DR823311.1|DR823311
EST:     GGACAGTGCAACCGCCCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|134769080|gb|DY742751.1|DY742751
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|24934373|gb|CA452591.1|CA452591
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|71328184|gb|DR800730.1|DR800730
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|78079813|gb|DV508225.1|DV508225
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|101399628|gb|EB821660.1|EB821660
EST:     GACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTTGAGGG                         T-GTCCATTTTGTCGGAAG
genomic: GACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTT-GAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG
EST: gi|50338487|gb|CO533613.1|CO533613
EST:     GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GGACAGTGCAAACGACCAGAAAAGCCTATCGAGATATATGAATTTGAAGGgtacagccta ... taatcttcagTTGTCCATTTTGTCGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgctgacttgtttcttctcttcattgttggtgtattcttgctaatcttcagTTGTCCATTTTGTCGGAAG
                                          tgctaat  putative branch site (score: 2)
                                      ttcttgct  CT-rich tract
                                    tattctt  TA-rich tract