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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgttatgtcatgatgttttctcacgtttaactttaagttgttccaaaacattataccttcttgaagatcacacttttgaatgcgacttttgtagccagAAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAGACATTGTTGAG

Basic information

species Zea mays
transcript GRMZM2G022777_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022777_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g55260.2 (Oryza sativa), 3'ss of exon 2
actgttatgtcatgatg-ttttctcacgtttaactttaagttgttccaaaacatta------------taccttcttgaagatcacacttttgaatgcgacttttgtagccagAAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAGACATTGTTGAG
       ||  || ||| |||||||| |   |||||| | || ||  || ||||||            ||   |||  || || ||  ||||| |     |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |
-------tgaaataatgcttttctcatggccaactttgatttatt--aagacattaactcaataaaattatgctctcaaacattacgattttggagttttcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22472534|gb|BU037014.1|BU037014
EST:     CGCGACGGAGACGCTGATGTCAT                         C
genomic: CGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|22472534|gb|BU037014.1|BU037014
EST:     CGCGACGGAGACGCTGATGTCAT                         C
genomic: CGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|22472534|gb|BU037014.1|BU037014
EST:     CGCGACGGAGACGCTGATGTCAT                         C
genomic: CGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|22472534|gb|BU037014.1|BU037014
EST:     CGCGACGGAGACGCTGATGTCAT                         C
genomic: CGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|22472534|gb|BU037014.1|BU037014
EST:     CGCGACGGAGACGCTGATGTCAT                         C
genomic: CGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76281419|gb|DV020987.1|DV020987
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76281419|gb|DV020987.1|DV020987
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76281419|gb|DV020987.1|DV020987
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76281419|gb|DV020987.1|DV020987
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76281419|gb|DV020987.1|DV020987
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|91876817|gb|EB406774.1|EB406774
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|91876817|gb|EB406774.1|EB406774
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|91876817|gb|EB406774.1|EB406774
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|91876817|gb|EB406774.1|EB406774
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|91876817|gb|EB406774.1|EB406774
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78106806|gb|DV525224.1|DV525224
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78106806|gb|DV525224.1|DV525224
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78106806|gb|DV525224.1|DV525224
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78106806|gb|DV525224.1|DV525224
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78106806|gb|DV525224.1|DV525224
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149035101|gb|EE155087.2|EE155087
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149035101|gb|EE155087.2|EE155087
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149035101|gb|EE155087.2|EE155087
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149035101|gb|EE155087.2|EE155087
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149035101|gb|EE155087.2|EE155087
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|30307202|gb|CD001875.1|CD001875
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|30307202|gb|CD001875.1|CD001875
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|30307202|gb|CD001875.1|CD001875
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211165539|gb|FL456882.1|FL456882
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         AAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAG
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccagAAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAG
EST: gi|211307019|gb|FL154241.1|FL154241
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307019|gb|FL154241.1|FL154241
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307019|gb|FL154241.1|FL154241
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211305004|gb|FL154239.1|FL154239
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211305004|gb|FL154239.1|FL154239
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211305004|gb|FL154239.1|FL154239
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78121929|gb|DV540313.1|DV540313
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78121929|gb|DV540313.1|DV540313
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78121929|gb|DV540313.1|DV540313
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78121929|gb|DV540313.1|DV540313
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78121929|gb|DV540313.1|DV540313
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|110487038|gb|EE012240.1|EE012240
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|110487038|gb|EE012240.1|EE012240
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|110487038|gb|EE012240.1|EE012240
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963213|gb|EE014191.2|EE014191
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963213|gb|EE014191.2|EE014191
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963213|gb|EE014191.2|EE014191
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963213|gb|EE014191.2|EE014191
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963213|gb|EE014191.2|EE014191
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|71297616|gb|DR784759.1|DR784759
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|71297616|gb|DR784759.1|DR784759
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|71297616|gb|DR784759.1|DR784759
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|71297616|gb|DR784759.1|DR784759
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|71297616|gb|DR784759.1|DR784759
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307018|gb|FL154240.1|FL154240
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307018|gb|FL154240.1|FL154240
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307018|gb|FL154240.1|FL154240
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78109695|gb|DV528111.1|DV528111
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78109695|gb|DV528111.1|DV528111
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78109695|gb|DV528111.1|DV528111
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78109695|gb|DV528111.1|DV528111
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|78109695|gb|DV528111.1|DV528111
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76280583|gb|DV020151.1|DV020151
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76280583|gb|DV020151.1|DV020151
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76280583|gb|DV020151.1|DV020151
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76280583|gb|DV020151.1|DV020151
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76280583|gb|DV020151.1|DV020151
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|30705707|gb|CD058888.1|CD058888
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|30705707|gb|CD058888.1|CD058888
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|30705707|gb|CD058888.1|CD058888
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149080059|gb|EE169077.2|EE169077
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149080059|gb|EE169077.2|EE169077
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149080059|gb|EE169077.2|EE169077
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149080059|gb|EE169077.2|EE169077
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149080059|gb|EE169077.2|EE169077
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|67021064|gb|CO449813.1|CO449813
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|67021064|gb|CO449813.1|CO449813
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|67021064|gb|CO449813.1|CO449813
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|67021064|gb|CO449813.1|CO449813
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|67021064|gb|CO449813.1|CO449813
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963079|gb|EE014036.2|EE014036
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963079|gb|EE014036.2|EE014036
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963079|gb|EE014036.2|EE014036
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963079|gb|EE014036.2|EE014036
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148963079|gb|EE014036.2|EE014036
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307022|gb|FL154244.1|FL154244
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307022|gb|FL154244.1|FL154244
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211307022|gb|FL154244.1|FL154244
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|8367772|gb|BE050717.1|BE050717
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|8367772|gb|BE050717.1|BE050717
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|8367772|gb|BE050717.1|BE050717
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|8367772|gb|BE050717.1|BE050717
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|8367772|gb|BE050717.1|BE050717
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149106054|gb|EE291707.2|EE291707
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149106054|gb|EE291707.2|EE291707
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|149106054|gb|EE291707.2|EE291707
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76933170|gb|DV173349.1|DV173349
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76933170|gb|DV173349.1|DV173349
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76933170|gb|DV173349.1|DV173349
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76933170|gb|DV173349.1|DV173349
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|76933170|gb|DV173349.1|DV173349
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211305000|gb|FL154235.1|FL154235
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGARACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211305000|gb|FL154235.1|FL154235
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGARACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211305000|gb|FL154235.1|FL154235
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGARACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148933119|gb|EC876754.2|EC876754
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148933119|gb|EC876754.2|EC876754
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148933119|gb|EC876754.2|EC876754
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148995361|gb|EE034575.2|EE034575
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148995361|gb|EE034575.2|EE034575
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148995361|gb|EE034575.2|EE034575
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148995361|gb|EE034575.2|EE034575
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|148995361|gb|EE034575.2|EE034575
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|31355560|gb|CD439917.1|CD439917
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|31355560|gb|CD439917.1|CD439917
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|31355560|gb|CD439917.1|CD439917
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|31355560|gb|CD439917.1|CD439917
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|31355560|gb|CD439917.1|CD439917
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         C
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccag-
EST: gi|211131749|gb|FL468282.1|FL468282
EST:     CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCAT                         AAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAG
genomic: CAGACCCAGGTCCGAGCCGCCGCGATTCGCGACGGAGACGCTGATGTCATgtgagcaccc ... ttgtagccagAAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaacattataccttcttgaagatcacacttttgaatgcgacttttgtagccagAAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAGACATTGTTGAG
                                          cttttgt  CT-rich tract
                              ttttgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgttatgtcatgatgttttctcacgtttaactttaagttgttccaaaacattataccttcttgaagatcacacttttgaatgcgacttttgtagccagAAGCCCCTTCTACCTTCATTTGAGTCAGCTGAAATGCGTAATCTCGCAGAGACATTGTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - ccaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc