Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtggctcaaaagctgcttgtgtttgtttttacaaagtgtctcatattttgcagttaaacaacatataataagcttgtttcatcctttatccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG

Basic information

species Zea mays
transcript GRMZM2G022088_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022088_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g16000.1 (Oryza sativa), 3'ss of exon 3
-----tgtggctcaaaagctgcttgtgtttgtt-tttacaaagtgtctcatattttgcagttaaacaacatataataagcttgtttcatcctttatccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG
     ||||   | ||||| |    |  ||| |  |||  ||||  ||   ||||| ||| |  ||||||||   ||| ||| ||   ||||||  |   |||||||||||| ||||| | ||||||||||| |||||||||||||| || || || |||||||||||||| ||||||||||||||  ||||||| |||||||||
agcattgtgatgctaaagcagaacattcttgatacttaggaagtaact-gcatttt-caggtttacaacataatgtaatcttatt--gtccttt--caaccttcagGATGATGTTGCACATGAAGCAGAGACAGGAAAGATATATAGGGCTGACTACAAGGACAAACATGGAAGAACTGTTCTTGTCCTGAGGCCAGGCTTAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211167268|gb|FL008219.1|FL008219
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167275|gb|FL008226.1|FL008226
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167270|gb|FL008221.1|FL008221
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|20301342|gb|BQ164285.1|BQ164285
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211168945|gb|FL008231.1|FL008231
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167263|gb|FL008214.1|FL008214
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|15053552|gb|BI359097.1|BI359097
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|74052559|gb|DN591144.1|DN591144
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165608|gb|FL008204.1|FL008204
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|15053553|gb|BI359098.1|BI359098
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211135875|gb|FL064018.1|FL064018
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211061980|gb|FL008188.1|FL008188
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAAGGAAGCAGAGACTGGAAAGATATAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGA-GGAAGCAGAGACTGGAAAGATATAT
EST: gi|211061987|gb|FL008195.1|FL008195
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211168942|gb|FL008228.1|FL008228
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167264|gb|FL008215.1|FL008215
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165611|gb|FL008207.1|FL008207
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCMGAGGAAGCCGAGACTGGAAAGATATATTGGGCGGATT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATT
EST: gi|37417894|gb|CF646606.1|CF646606
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165616|gb|FL008212.1|FL008212
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165604|gb|FL008200.1|FL008200
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211061985|gb|FL008193.1|FL008193
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATA
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATA
EST: gi|211165612|gb|FL008208.1|FL008208
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211061984|gb|FL008192.1|FL008192
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGC
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGC
EST: gi|211167276|gb|FL008227.1|FL008227
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165606|gb|FL008202.1|FL008202
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167267|gb|FL008218.1|FL008218
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|12046637|gb|BF728789.1|BF728789
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211061982|gb|FL008190.1|FL008190
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAAGATATATAGGGCGGATTA
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAA-GATATATAGAGCGGATTA
EST: gi|31351892|gb|CD436249.1|CD436249
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165602|gb|FL008198.1|FL008198
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGAC
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGAC
EST: gi|211165603|gb|FL008199.1|FL008199
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211168943|gb|FL008229.1|FL008229
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211168946|gb|FL008232.1|FL008232
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165610|gb|FL008206.1|FL008206
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165605|gb|FL008201.1|FL008201
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167262|gb|FL008213.1|FL008213
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211061989|gb|FL008197.1|FL008197
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211061983|gb|FL008191.1|FL008191
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165613|gb|FL008209.1|FL008209
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|7031339|gb|AW461077.1|AW461077
EST:     AAGCAGCTGNGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167271|gb|FL008222.1|FL008222
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211061981|gb|FL008189.1|FL008189
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGC
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGC
EST: gi|211061986|gb|FL008194.1|FL008194
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211168947|gb|FL008233.1|FL008233
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211167273|gb|FL008224.1|FL008224
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165609|gb|FL008205.1|FL008205
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211165615|gb|FL008211.1|FL008211
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT
EST: gi|211135877|gb|FL064020.1|FL064020
EST:     AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGG                         GATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGGGCGGATTAT
genomic: AAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 247

ATTTCTTCGAGCAAGGAACTGGAATGTGCAGAAAGCTAGTAAAATGATGAAAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 384

ATTTCTTCGAGCAAGGAACTGGAATGTGCAGAAAGCTAGTAAAATGATGAAAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 392

ATTTCTTCGAGCAAGGAACTGGAATGTGCAGAAAGCTAGTAAAATGATGAAAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 648

ATTTCTTCGAGCAAGGAACTGGAATGTGCAGAAAGCTAGTAAAATGATGAAAGCAGCTGTGAAGTGGCGGCTTGCATTCAAACCTGAAAACATCTGTTGGgtatgttggt ... ccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgcagttaaacaacatataataagcttgtttcatcctttatccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG
                            cttgtttcatccttta  CT-rich tract
         ttaaacaacatataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtggctcaaaagctgcttgtgtttgtttttacaaagtgtctcatattttgcagttaaacaacatataataagcttgtttcatcctttatccttcttcagGATGATATTGCAGAGGAAGCAGAGACTGGAAAGATATATAGAGCGGATTATAAGGACAAACATGGCAGAACTGTTCTTGTATTGAGGCCTGGCTTAGAG

tgtggct
- - - - - - gctgctt
- - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacata