Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactcctgtattctcagcacttgttttctgactcccacatttgctccatgcttcaccttttttcttgtttttttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAAATCTTGCAGAGATTGATCCCCTGGCATCTCTTCCAAAGCTACAATTCCT

Basic information

species Zea mays
transcript GRMZM2G021742_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021742_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g13990.3 (Oryza sativa), 3'ss of exon 3
-----gtaagaactcctgtattctcagcacttgttt-tctgactcccacatttgctccatgcttcaccttttttcttgtttttttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAAATCTTGCAGAGATTGATCCCCTGGCATCTCTTCCAAAGCTACAATTCCT
      | | |  |  | | || | |  |  ||||| ||    ||  |  |||||||||    | |||||   |      | |||| |    ||||| ||||||||| | |||||  ||||||| || || |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || || ||
gtaagattatatattttatcttgttatgatctgtttatcattttcataattttgctccagaacttaccttcagttgctcctgtttcta----gAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAATCTTGCGGAGATCGATCCCCTGGCATCTCTTCCAAAGCTTCAGTTTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211426971|gb|FK970232.1|FK970232
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211426968|gb|FK970229.1|FK970229
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|93011955|gb|EB637475.1|EB637475
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429560|gb|FK970248.1|FK970248
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211424364|gb|FK970219.1|FK970219
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCYGGTGCTCACGAATAATCGTCTG
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTG
EST: gi|211437351|gb|FK970281.1|FK970281
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGAC
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGAC
EST: gi|148969290|gb|EE020060.2|EE020060
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429559|gb|FK970247.1|FK970247
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTNTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432149|gb|FK970251.1|FK970251
EST:     CTACTAGTTAATAATAACAGAATCMCNACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: CTACTAGTTAATAATAACAGAATCAC-ACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211426960|gb|FK970221.1|FK970221
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211426962|gb|FK970223.1|FK970223
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGGCAAAG
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAG
EST: gi|211424362|gb|FK970217.1|FK970217
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429561|gb|FK970249.1|FK970249
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434758|gb|FK970271.1|FK970271
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432156|gb|FK970258.1|FK970258
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|78117952|gb|DV536339.1|DV536339
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434752|gb|FK970265.1|FK970265
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429555|gb|FK970243.1|FK970243
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434763|gb|FK970276.1|FK970276
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211424363|gb|FK970218.1|FK970218
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTTCACGAATAATCGTCTGACA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCT-CACGAATAATCGTCTGACA
EST: gi|211434762|gb|FK970275.1|FK970275
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAAT
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAAT
EST: gi|211429550|gb|FK970238.1|FK970238
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211426965|gb|FK970226.1|FK970226
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAAATAATCGTCTGACA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAA-TAATCGTCTGACA
EST: gi|211434757|gb|FK970270.1|FK970270
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211424361|gb|FK970216.1|FK970216
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|78118268|gb|DV536655.1|DV536655
EST:     CGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: CGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432159|gb|FK970261.1|FK970261
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429557|gb|FK970245.1|FK970245
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429553|gb|FK970241.1|FK970241
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211426959|gb|FK970220.1|FK970220
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432151|gb|FK970253.1|FK970253
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTTCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|60353183|gb|DN220156.1|DN220156
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432161|gb|FK970263.1|FK970263
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432154|gb|FK970256.1|FK970256
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429552|gb|FK970240.1|FK970240
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434766|gb|FK970279.1|FK970279
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432155|gb|FK970257.1|FK970257
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211426964|gb|FK970225.1|FK970225
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTSCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432158|gb|FK970260.1|FK970260
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGA
EST: gi|211429558|gb|FK970246.1|FK970246
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434759|gb|FK970272.1|FK970272
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|50326108|gb|CO521234.1|CO521234
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432162|gb|FK970264.1|FK970264
EST:     TCTACTAGTTMATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|60340700|gb|DN207673.1|DN207673
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434765|gb|FK970278.1|FK970278
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGGATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429556|gb|FK970244.1|FK970244
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211424360|gb|FK970215.1|FK970215
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434754|gb|FK970267.1|FK970267
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|76292483|gb|DV032051.1|DV032051
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211426961|gb|FK970222.1|FK970222
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211434761|gb|FK970274.1|FK970274
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211429547|gb|FK970235.1|FK970235
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432157|gb|FK970259.1|FK970259
EST:     CTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATTCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACA
genomic: CTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAAT-CTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACA
EST: gi|211426969|gb|FK970230.1|FK970230
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGYTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTC
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTC
EST: gi|211434760|gb|FK970273.1|FK970273
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|71319736|gb|DR796618.1|DR796618
EST:     TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAA
EST: gi|211432153|gb|FK970255.1|FK970255
EST:     TCTACTAGTTNATAATAACAGAATCACACGTATCAATCCCAATCTTGGCG                         AGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAAT
genomic: TCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 259

AATGAGATTGTCAAGCTTGAAAACTTCCCATACTTGAATCGTCTTGGCACTCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAAATCTTGCAGAGATTGATCCCCTGGCATCTCTTCCAAAGCTACAATTCCT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 173

AATGAGATTGTCAAGCTTGAAAACTTCCCATACTTGAATCGTCTTGGCACTCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAAATCTTGCAGAGATTGATCCCCTGGCATCTCTTCCAAAGCTACAATTCCT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 136

AATGAGATTGTCAAGCTTGAAAACTTCCCATACTTGAATCGTCTTGGCACTCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAAATCTTGCAGAGATTGATCCCCTGGCATCTCTTCCAAAGCTACAATTCCT


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 92

AATGAGATTGTCAAGCTTGAAAACTTCCCATACTTGAATCGTCTTGGCACTCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaactc ... ttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAAATCTTGCAGAGATTGATCCCCTGGCATCTCTTCCAAAGCTACAATTCCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgactcccacatttgctccatgcttcaccttttttcttgtttttttccatgcagAGTTTTTGCCAAAGCTGCATACGCTGGTGCTCACGAATAATCGTCTGACAAATCTTGCAGAGATTGATCCCCTGGCATCTCTTCCAAAGCTACAATTCCT
 ttctgac  putative branch site (score: 92)
            tttgctccatgcttca  putative PPT
                              ttttttcttgtttttt  TA-rich tract