1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgctatatggaccccttcatgcaaaaaatgatatcatttttaataattttatttgcagtttacaactgggatgcttctctaacctttaaacaatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTTTAATTTTAACTGTTGCCAGTGAGGTTTTTGAGGAATCAGGGAGGACAC
species | Zea mays |
transcript | GRMZM2G020574_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|32796673|gb|CD948909.1|CD948909
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|91877173|gb|EB407130.1|EB407130
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
attttatttgcagtttacaactgggatgcttctctaacctttaaacaatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTTTAATTTTAACTGTTGCCAGTGAGGTTTTTGAGGAATCAGGGAGGACAC
ctctaac putative branch site (score: 2)
tttaaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctatatggaccccttcatgcaaaaaatgatatcatttttaataattttatttgcagtttacaactgggatgcttctctaacctttaaacaatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTTTAATTTTAACTGTTGCCAGTGAGGTTTTTGAGGAATCAGGGAGGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA