1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttgtgagtatcttgttctttcatgtttcactattttccaccaccctcatcatcccatgattgaattaacattatgtatgattcatttcccagtgcagCACCCCATCCAAATATAAATCTACAAATGAATTATTGGCCTGCGCTTCCTTGTAATCTTAGCGAGTGCCAAGAACCACTGTTTGACTTTATTGGTTCCCT
species | Zea mays |
transcript | GRMZM2G019673_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGA CACCCCATCNCAA-TATAAATCTACAAATGAATTATTGGCCTGCGCTTCCTEST: gi|20300347|gb|BQ163290.1|BQ163290
genomic: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGAgtatgatttt ... cccagtgcagCACCCCATC-CAAATATAAATCTACAAATGAATTATTGGCCTGCGCTTCCT
EST: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGA TEST: gi|20300347|gb|BQ163290.1|BQ163290
genomic: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGAgtatgatttt ... cccagtgcag-
EST: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGA TEST: gi|20300347|gb|BQ163290.1|BQ163290
genomic: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGAgtatgatttt ... cccagtgcag-
EST: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGA T
genomic: ATTTCCAATCTACAAGGGATATGGAGCAATGACACTTCACCACCATGGGAgtatgatttt ... cccagtgcag-
ccctcatcatcccatgattgaattaacattatgtatgattcatttcccagtgcagCACCCCATCCAAATATAAATCTACAAATGAATTATTGGCCTGCGCTTCCTTGTAATCTTAGCGAGTGCCAAGAACCACTGTTTGACTTTATTGGTTCCCT
aattaac putative branch site (score: 5)
ttcatttccc putative PPT
attgaattaacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgtgagtatcttgttctttcatgtttcactattttccaccaccctcatcatcccatgattgaattaacattatgtatgattcatttcccagtgcagCACCCCATCCAAATATAAATCTACAAATGAATTATTGGCCTGCGCTTCCTTGTAATCTTAGCGAGTGCCAAGAACCACTGTTTGACTTTATTGGTTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcattt