1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtattctactgtcaaccatactcacattggccttgaacatttttccatttttttgtatgaacaattcctacagttcttgtgccatttgttccattttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
species | Zea mays |
transcript | GRMZM2G019358_T06 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG ----G-CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACEST: gi|211345091|gb|FL234332.1|FL234332
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... attttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTAC
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG ----G-CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACEST: gi|211347484|gb|FL234337.1|FL234337
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... attttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTAC
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG ----G-CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACEST: gi|211349886|gb|FL234352.1|FL234352
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... attttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTAC
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG ----G-CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACEST: gi|211349887|gb|FL234353.1|FL234353
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... attttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTAC
EST: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTG ----G-CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTAC
genomic: GACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact ... attttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTAC
tttttttgtatgaacaattcctacagttcttgtgccatttgttccattttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
tttgttccatttttt CT-rich tract
attttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattctactgtcaaccatactcacattggccttgaacatttttccatttttttgtatgaacaattcctacagttcttgtgccatttgttccattttttgagTTCAGGCTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA