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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggttttctggacaaagatcgcatatttagtcaattacgtctactcatcctttttcccttcatttcatttgattgaatgatacataaccattcacgtcttttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGGCACATCTGCTTAG

Basic information

species Zea mays
transcript GRMZM2G018447_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018447_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g44000.1 (Oryza sativa), 3'ss of exon 3
----gtctggttttctggacaaa--gatcgcatatttagtcaattacgtctactcatcctttttcccttcat---ttcatttgattgaat---gatacataaccattcacgtcttttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGGCACATCTGCTTAG
    |  |  |||||   ||| |    |  |  || |||  |  |     || || |    ||||   ||||   |||  |  |||  ||   | | || |   ||| |  |||||   |||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| ||||
gtgagctttcttttcacaacagattactttctcatatagaaacctttaattaatcctttcgtttcttctcatctgttccctgcattcgatttggttgcaaactaatttaactctttca-ttccagGTCATTTTTCTCAACCCGGCGCCGATGCATCCACACATTTACAGCAACGGGCACATCTGTTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211421813|gb|FL084940.1|FL084940
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211424407|gb|FL084942.1|FL084942
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|18163588|gb|BM333427.1|BM333427
EST:     AGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: AGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|17929384|gb|BM266344.1|BM266344
EST:     ACCAGTTGCAGGTTGACTTCCNTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211424413|gb|FL084948.1|FL084948
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCNATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|32869440|gb|CF009122.1|CF009122
EST:     ACCATTTTTTGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211424415|gb|FL084950.1|FL084950
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211424416|gb|FL084951.1|FL084951
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211424414|gb|FL084949.1|FL084949
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|89246821|gb|DY618608.1|DY618608
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|60352940|gb|DN219913.1|DN219913
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211421802|gb|FL084929.1|FL084929
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|18166490|gb|BM336329.1|BM336329
EST:     AGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: AGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211424417|gb|FL084952.1|FL084952
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|76288120|gb|DV027688.1|DV027688
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211421805|gb|FL084932.1|FL084932
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|18169036|gb|BM338876.1|BM338876
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|116821688|gb|EC865015.1|EC865015
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCAACTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|76018970|gb|DT946140.1|DT946140
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
EST: gi|211421808|gb|FL084935.1|FL084935
EST:     ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAG                         GTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG
genomic: ACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCTCAGgtctggtttt ... ttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttcatttcatttgattgaatgatacataaccattcacgtcttttgcttccagGTCATTTTTCTCAATCCAGCGCCAATGCATCCACACATCTACAGCAACGGGCACATCTGCTTAG
                          acataac  putative branch site (score: 3)
                                       cgtcttttgcttcc  putative PPT
      atttcattt  TA-rich tract