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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcccactggtgaaacttatctctcatgcagtttattttcaaattatcaactcttgcgtggaagcaagcttaataagttccctgatgtcatgattttctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG

Basic information

species Zea mays
transcript GRMZM2G017941_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211169637|gb|FL169510.1|FL169510
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|149084465|gb|EE173923.2|EE173923
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171318|gb|FL169524.1|FL169524
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211169635|gb|FL169508.1|FL169508
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|149108720|gb|EE292928.2|EE292928
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211172991|gb|FL169534.1|FL169534
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|71329488|gb|DR801466.1|DR801466
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171321|gb|FL169527.1|FL169527
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211174667|gb|FL169548.1|FL169548
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171319|gb|FL169525.1|FL169525
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211169640|gb|FL169513.1|FL169513
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171310|gb|FL169516.1|FL169516
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|149013784|gb|EE043248.2|EE043248
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171315|gb|FL169521.1|FL169521
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|91877946|gb|EB407903.1|EB407903
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171316|gb|FL169522.1|FL169522
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACT-AGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171312|gb|FL169518.1|FL169518
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGAT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGAT
EST: gi|31358873|gb|CD443230.1|CD443230
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|93281025|gb|EB673289.1|EB673289
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171322|gb|FL169528.1|FL169528
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|78106618|gb|DV525036.1|DV525036
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211169633|gb|FL169506.1|FL169506
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|89756714|gb|DY686644.1|DY686644
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTAT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTAT
EST: gi|101399852|gb|EB821772.1|EB821772
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211172995|gb|FL169538.1|FL169538
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211172994|gb|FL169537.1|FL169537
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211172988|gb|FL169531.1|FL169531
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211169634|gb|FL169507.1|FL169507
EST:     GAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTGATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTAT
genomic: GAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTT-ATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTAT
EST: gi|67024634|gb|CO453383.1|CO453383
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211169632|gb|FL169505.1|FL169505
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171320|gb|FL169526.1|FL169526
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211169641|gb|FL169514.1|FL169514
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211174666|gb|FL169547.1|FL169547
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171323|gb|FL169529.1|FL169529
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211171311|gb|FL169517.1|FL169517
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|149072392|gb|EE160666.2|EE160666
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211172996|gb|FL169539.1|FL169539
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACT-AGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|148982778|gb|EE028604.2|EE028604
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211172987|gb|FL169530.1|FL169530
EST:     AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTAWG                         TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 366

CCGCTCTGATGATGCTAAGGAGGTAGTCCATTATCAAACAATCTCACCAAAGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 644

CCGCTCTGATGATGCTAAGGAGGTAGTCCATTATCAAACAATCTCACCAAAGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 466

CCGCTCTGATGATGCTAAGGAGGTAGTCCATTATCAAACAATCTCACCAAAGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 490

CCGCTCTGATGATGCTAAGGAGGTAGTCCATTATCAAACAATCTCACCAAAGAACTTAGCTAAATCTGTTCTTGAGGAAGGTGGCTGGTCAACCTTTATGgtaagtatcc ... ctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcgtggaagcaagcttaataagttccctgatgtcatgattttctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG
                           ccctgat  putative branch site (score: 490)
                                         ttttctattctt  putative PPT
                                        attttctattctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatcccactggtgaaacttatctctcatgcagtttattttcaaattatcaactcttgcgtggaagcaagcttaataagttccctgatgtcatgattttctattcttagTGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC