1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttactcagtttacttcatgtctttagtgctgttagttttcttatgaattcatgcagttaatgtgtgacactttctggtttaatttgtttttacttctagATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAGTCACCCCCTCGCAGAAATGGCAGTGCCAATGG
species | Zea mays |
transcript | GRMZM2G017845_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATAGCGCTCTCTCTATCGGAAGAGGAGCAAAGAAAGGAAAAGGCAATAG ATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGGEST: gi|211158045|gb|FL160650.1|FL160650
genomic: TATAGCGCTCTCTCTATCGGAAGAGGAGCAAAGAAAGGAAAAGGCAATAGgttggtatgc ... ttacttctagATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGG
EST: TATAGCGCTCTCTCTATCGGAAGAGGAGCAAAGAAAGGAAAAGGCAATAG ATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGGEST: gi|211158047|gb|FL160652.1|FL160652
genomic: TATAGCGCTCTCTCTATCGGAAGAGGAGCAAAGAAAGGAAAAGGCAATAGgttggtatgc ... ttacttctagATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGG
EST: TATAGCGCTCTCTCTATCGGAAGAGGAGCAAAGAAAGGAAAAGGCAATAG ATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGG
genomic: TATAGCGCTCTCTCTATCGGAAGAGGAGCAAAGAAAGGAAAAGGCAATAGgttggtatgc ... ttacttctagATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGG
gaattcatgcagttaatgtgtgacactttctggtttaatttgtttttacttctagATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAGTCACCCCCTCGCAGAAATGGCAGTGCCAATGG
gtttaat putative branch site (score: 44)
tttgtttttacttct CT-rich tract
tttaatttgtttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttactcagtttacttcatgtctttagtgctgttagttttcttatgaattcatgcagttaatgtgtgacactttctggtttaatttgtttttacttctagATAAGGATATGCATTTGGAGGAGGATGAGCAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAGTCACCCCCTCGCAGAAATGGCAGTGCCAATGG
- - - - - - -cttcatg
- - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - ttcatgc