1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtagcgaatcgattcatatgtagagatttgtgcgggcttatcttttttttttcagtccccaaaaaaacatcatttcgaaacctaatgggtggctcctttattgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGCCGCTGGCATCGTCGGAGGTGGACATGGATGAGCCAGACGCTCCTGAGA
species | Zea mays |
transcript | GRMZM2G017624_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAG ATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGEST: gi|32869158|gb|CF008840.1|CF008840
genomic: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAGgtgagtagcg ... ttgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
EST: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAG ATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGEST: gi|76917886|gb|DV167057.1|DV167057
genomic: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAGgtgagtagcg ... ttgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
EST: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAG ATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGEST: gi|211102933|gb|FL076724.1|FL076724
genomic: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAGgtgagtagcg ... ttgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
EST: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAG ATTGGATCCAAGGGGAAGTAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGEST: gi|91049284|gb|EB159702.1|EB159702
genomic: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAGgtgagtagcg ... ttgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
EST: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAG ATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGEST: gi|149032597|gb|EE154932.2|EE154932
genomic: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAGgtgagtagcg ... ttgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
EST: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAG ATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGEST: gi|89250818|gb|DY622604.1|DY622604
genomic: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAGgtgagtagcg ... ttgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
EST: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAG ATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
genomic: GTTTGGATCGGGGATAGGGATGGAAGTGGACAGAAAGAAGAATTTGCAGgtgagtagcg ... ttgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAG
tccccaaaaaaacatcatttcgaaacctaatgggtggctcctttattgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGCCGCTGGCATCGTCGGAGGTGGACATGGATGAGCCAGACGCTCCTGAGA
acctaat putative branch site (score: 402)
ctcctttatt putative PPT
aaaaaaacatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagcgaatcgattcatatgtagagatttgtgcgggcttatcttttttttttcagtccccaaaaaaacatcatttcgaaacctaatgggtggctcctttattgcgagaagATTGGATCCAAGGGGAAGGAGGTTCAGAGCAAGAATCCGAGGCGGGAGGAGCCGCTGGCATCGTCGGAGGTGGACATGGATGAGCCAGACGCTCCTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA