Sequence
atgc intronic sequence ATGC exonic sequence...ggaaaaaaacaccctgtttgtattacacttttaaccctttctgtccttttgctttgtgctaacattttgaccaccaccctatggttctttatgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 3'ss of exon 2
ggaaaaaaacaccctgtttgtattacacttttaaccctttctgtccttttgctttgtgctaacattttgaccaccacc----ctatggttcttta----tgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
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----tgtgatttcaccataggattgctaggcaaaactcctcctttttatattagtatagatatattttgaccacctccatccatatgcttcttctttgttctagACAGCTCTTCCTGCTCTTCCTGTCTTTCTCCTTGGCTGTTGAAGCACTACATGCATTTATGCAAGATGAGTCTGAGCATAA
upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G33030.1 (Glycine max), 3'ss of exon 3
ggaaaaaaacaccctgtttgtattacacttttaaccctttctgtccttt---tgctttgtgctaacattttgaccaccaccctatggttctttatgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
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---taactatggcaaacttaattcattattttctcctgtttggtacattacatcatatgcgctaacatcttgaattttcttgttctgctgcttgtgtagacagCTATTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAGGCACTTCATGCATTCATACAAGATGAATCAGAGCACAA
upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G30140.1 (Glycine max), 3'ss of exon 3
ggaaaaaaacaccctgtttgtattacacttttaaccctttctgtccttt---tgctttgtgctaacattttgaccaccaccctatggttctttatgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
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---taactatggcaaacttatttcattcttttctcttgttcggtacattacatcatgtgcgctaacatcttgaattttcttgttctgctgcctgtgtagacagCTGTTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAGGCACTTCATGCATTCATACAAGATGAATCAGAGCACAA
upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 3
lower sequence: AT3G12100.1 (Arabidopsis thaliana), 3'ss of exon 3
ggaaaaaaacaccctgtttgtattacacttttaaccctttctgtccttttgctttgtg-ctaacattttgaccaccaccctatg-gttctttatgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
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--ccatacaatctatcttttcgttttgcctttcattgtctctgtagtttatctttttggttaatactttgatttgtttaatatttgacatatgtgtagacagCTGTTCCTTATGTTCATGTCATTCTCCTTAGCTGTGGAAGCTCTTCATGCATTTATACAAGATGAATCAGAGCATAA
upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 3
ggaaaaaaacaccctgtttgtattacacttttaaccctttctgtccttt--tgctt-tgtgctaacattttgaccaccaccctatggttctttatgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
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--ttttcatcattatgtgattattgttgtcatcatttttcttgttggttgctgcctctagactaacatgtaaat-attttgattctgctgcatgtttagacagCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttgctttgtgctaacattttgaccaccaccctatggttctttatgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
ttctttat CT-rich tract
taacatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaaaaaaacaccctgtttgtattacacttttaaccctttctgtccttttgctttgtgctaacattttgaccaccaccctatggttctttatgtagacagCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA