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...tttcacttccctcgttttaatactgtcaacagtaatgttactaaaattgttcagtgtattaccaccataagcctaaccttggagttaccgatatttacagCTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG
species | Zea mays |
transcript | GRMZM2G017329_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGAAGCTACATATGCACCTTTTATTTCTCAAGCGGGCTTGCCACAGAG CTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGEST: gi|78075157|gb|DV503591.1|DV503591
genomic: AGAGAAGCTGCATATGCACCTTTTATTTCTCAAGCGGGCTTGCCACAGAGgtattttgct ... atatttacagCTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCG
EST: TTTATTTTTCAAGCGGGCTTGCCACAGAG CTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGEST: gi|67026173|gb|CO454922.1|CO454922
genomic: TTTATTTCTCAAGCGGGCTTGCCACAGAGgtattttgct ... atatttacagCTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCG
EST: GGCTTGCCACAGAG CTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGEST: gi|32941316|gb|CF046135.1|CF046135
genomic: GGCTTGCCACAGAGgtattttgct ... atatttacagCTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCG
EST: AGAGAAGCTGCATATGCACCTTTCATTTCTCAAGCGGGCTTGCCACAGAG CTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGEST: gi|211157709|gb|FL243881.1|FL243881
genomic: AGAGAAGCTGCATATGCACCTTTTATTTCTCAAGCGGGCTTGCCACAGAGgtattttgct ... atatttacagCTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCG
EST: AGAGAAGCTGCATATGCACCTTTCATTTCTCAAGCGGGCTTGCCACAGAG CTACAACTCAAGTGAAGTGAATAATGG
genomic: AGAGAAGCTGCATATGCACCTTTTATTTCTCAAGCGGGCTTGCCACAGAGgtattttgct ... atatttacagCTACAACTCAAGTGAAGTGAATAATGG
attgttcagtgtattaccaccataagcctaaccttggagttaccgatatttacagCTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG
gcctaac putative branch site (score: 338)
atatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcacttccctcgttttaatactgtcaacagtaatgttactaaaattgttcagtgtattaccaccataagcctaaccttggagttaccgatatttacagCTACAACTCAAGTGAAGTGAATAATGGTGCTGATAGGTTGGCAGAGCAGCGCACACAGCTTCTAGAATCTAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccacc