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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctagttttgagcatgtttcatggaaatggctattgtattttttactgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA

Basic information

species Zea mays
transcript GRMZM2G017254_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017254_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g08270.3 (Oryza sativa), 3'ss of exon 2
tctagttttgagcatgtttcatggaaatggctattgtattttttactgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA
  |   ||||  |||| || |||| |||| |||   |||  ||   ||||||   | | || ||  |||||  | | |||| || ||||   | || |||| |||||| ||||| ||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| ||
cttccatttggccatgcttgatgggaatgactaagatatgattacatgcatgatgtctgcttcaagcatttatttaatattatcatatgttcattagcagAATAAAGTTGATGGACGATTCAATCAGAATCTGAGGTCACTGTCGTTTGGACATTCAAGTCCTCCATCACCAGCATCATATGGTCAAAATGGTCTTGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA
                                           gcctaat  putative branch site (score: 3)
                      attttctaagtatt  TA-rich tract