Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctagttttgagcatgtttcatggaaatggctattgtattttttactgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA

Basic information

species Zea mays
transcript GRMZM2G017254_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017254_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g08270.3 (Oryza sativa), 3'ss of exon 2
tctagttttgagcatgtttcatggaaatggctattgtattttttactgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA
  |   ||||  |||| || |||| |||| |||   |||  ||   ||||||   | | || ||  |||||  | | |||| || ||||   | || |||| |||||| ||||| ||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| ||
cttccatttggccatgcttgatgggaatgactaagatatgattacatgcatgatgtctgcttcaagcatttatttaatattatcatatgttcattagcagAATAAAGTTGATGGACGATTCAATCAGAATCTGAGGTCACTGTCGTTTGGACATTCAAGTCCTCCATCACCAGCATCATATGGTCAAAATGGTCTTGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8368733|gb|BE051678.1|BE051678
EST:     GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG                         AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: gi|22490953|gb|BU050876.1|BU050876
EST:     GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG                         AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: gi|60350389|gb|DN217362.1|DN217362
EST:     GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG                         AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: gi|7227420|gb|AW566061.1|AW566061
EST:     GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG                         AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: gi|19057472|gb|BM736124.1|BM736124
EST:     GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG                         AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA
                                           gcctaat  putative branch site (score: 3)
                      attttctaagtatt  TA-rich tract