1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctagttttgagcatgtttcatggaaatggctattgtattttttactgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA
species | Zea mays |
transcript | GRMZM2G017254_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAEST: gi|8368733|gb|BE051678.1|BE051678
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAEST: gi|22490953|gb|BU050876.1|BU050876
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAEST: gi|7227420|gb|AW566061.1|AW566061
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAEST: gi|19057472|gb|BM736124.1|BM736124
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
EST: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAG AGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
genomic: GAAGCAGGCGCAGCTTAAGCACGACTATGGATATCATGAGTCAGCTGGAGgtctgtcctc ... ctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGA
ctgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA
gcctaat putative branch site (score: 101)
attttctaagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagttttgagcatgtttcatggaaatggctattgtattttttactgcatggatttttctacatacattttctaagtattgtcgtatgcctaataacagAGTAAAGTCGATGGGCGACTCAATCAGAACCTCAGGTCACTGTCGTTTGGAAATTCAAGTCCTCCATCACCAGCATCATATGCCCAAAATGGTCTTGGAA
- - - - -gagcatg
- - - - - - - - - -catggaa
- - - - - - - - - - - - - - -gctattg
- - - - - - - - - - - - - - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacattt