Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttatcatatcttcattttgttggatgttttgtatacggcatatagcctgtgcttccctactggatatgaattaaccaactcttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG

Basic information

species Zea mays
transcript GRMZM2G017087_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017087_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g51690.3 (Oryza sativa), 3'ss of exon 3
---ttttatcatatcttcattttgttggatgttttgtatacggcatatagcctgtgcttccctactggatatgaattaaccaactcttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG
   || | |  || | |   | || |  |   | |  || |    ||| |||  |||     | |||   |||  |||   | || ||      |  |||||||||| |||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
tagttatctactaccatttctgtgctataaaatata-atgcaagctatcgcc-atgcagatttcctgatcatgg-ttatgtatctattttacatgtggagcagGAGAGTCAGAAGGTGGCACTGGCGGAGTCGACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCCTCCG

upper sequence: GRMZM2G017087_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S235_27V6.1 (Physcomitrella patens), 3'ss of exon 6
-ttttatcatatcttcattttgttggatgttttgtatacggcatatagcctgtgcttccctactggatatgaattaaccaactcttcccatcggt--gagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTAC-CGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG-
   ||||  ||     || |      | |      |      |||  | |  |||||  || || ||  |    ||||||||| |      |  |     |||||||   ||||    | ||  ||  |  ||   ||| ||  |||| ||||| || |||||||||||||||||  |||| ||||||||||||| ||     | 
aagttattttaaggagatatcaccata-gaaaaacaattaaaataatgacgctgcttgtcttctagaagt--tctaaccaactgtcaagtgcactctacacagGAGATGGAGAAA-CAGTACCTGCAAAAACTCTGCGGTCTAAACCTAAAGCAAATTAACAACTGGTTCATCAATGAGCGCAAGCGGCACTGGA-GCTGCGAGG

upper sequence: GRMZM2G017087_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
---------------------------------ttttatcatatcttcattttgt----tggatgttttgta-tacggcatatagcctgtg-cttccctactggatatgaattaaccaact-cttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG
                                  | | ||   |  || || ||     |||  ||    |      |    |    |||| | |    |  |  | |   ||   ||  | ||||     | ||  |||||||  || |||  |   || ||  | || |||||||| ||||  |||||||||||||||||||| || |||||||| |||||||||||||| ||    |
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG

upper sequence: GRMZM2G017087_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ21443 (Selaginella moellendorffii), 3'ss of exon 5
---------------------------------ttttatcatatcttcattttgt----tggatgttttgta-tacggcatatagcctgtg-cttccctactggatatgaattaaccaact-cttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG
                                    | ||   |  || || ||     |||  ||    |      |    |    |||| | |    | ||  | |   ||   ||  | |||| |   | ||  |||||||  || |||  |   || ||  | || ||||| || ||||  |||||||||||||||||||| || |||||||| |||||||||||||| |||   |
gtgagtacctttgtgttctttcttgttggcattccgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcattgcttttttctttgacatttgcttcgctgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGCCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCACAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469581|gb|DY235951.1|DY235951
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|29544842|gb|CB605450.1|CB605450
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|91052571|gb|EB162989.1|EB162989
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|71313265|gb|DR793161.1|DR793161
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|20336942|gb|BQ172572.1|BQ172572
EST:     GCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: GCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|71770872|gb|DR968809.1|DR968809
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|76923266|gb|DV169401.1|DV169401
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|5018263|gb|AI714456.1|AI714456
EST:     GTGGGATCAGCACTCCAAATGGCCTTACCCCTCA                         NAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: GTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|31911208|gb|CD651809.1|CD651809
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|148943978|gb|EC889059.2|EC889059
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         AAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|50334849|gb|CO529975.1|CO529975
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60351132|gb|DN218105.1|DN218105
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|29544136|gb|CB604516.1|CB604516
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60350722|gb|DN217695.1|DN217695
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|78545017|gb|DV622515.1|DV622515
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60350319|gb|DN217292.1|DN217292
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60341875|gb|DN208848.1|DN208848
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|4804098|gb|AI665964.1|AI665964
EST:     CAAATGGCCTTA-CCCTCA                         -AGACTCAGAAGGTGGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCA
genomic: CAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGT-GGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCA
EST: gi|22542334|gb|BU092787.1|BU092787
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|50332684|gb|CO527810.1|CO527810
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|74236767|gb|DT644681.1|DT644681
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|5468813|gb|AI834604.1|AI834604
EST:     AGCAGCTCCTTA-CTGGTGGGATCAGC-CTACAAATGGCCTT-CCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|9732390|gb|BE511142.1|BE511142
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|37384926|gb|CF629568.1|CF629568
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60344228|gb|DN211201.1|DN211201
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60338293|gb|DN205266.1|DN205266
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|18178289|gb|BM379499.1|BM379499
EST:     GGATCAGCACTACAAATGGCCTTA-CCCTNCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCA
genomic: GGATCAGCACTACAAATGGCCTTACCCCT-CAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCA
EST: gi|4938760|gb|AI691173.1|AI691173
EST:     TGGTGGGTTCAGCACTACAAATGCCCTTACCCCTCA                         NAGACTCAGAAGGTGGCNCTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: TGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|211385211|gb|FK954743.1|FK954743
EST:     GGGATCAGCACTACAAATGGCCTTACCCCTCA                         NAGACTCANAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: GGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60396431|gb|DN229300.1|DN229300
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|76019795|gb|DT946965.1|DT946965
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|211420637|gb|FL480902.1|FL480902
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|71760196|gb|DR958133.1|DR958133
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60357332|gb|DN224305.1|DN224305
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|22521286|gb|BU080097.1|BU080097
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCTTTTGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60343954|gb|DN210927.1|DN210927
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|50326875|gb|CO522001.1|CO522001
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
EST: gi|60357235|gb|DN224208.1|DN224208
EST:     AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCA                         GAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG
genomic: AGCAGCTCCTTAGCTGGTGGGATCAGCACTACAAATGGCCTTACCCCTCAgtacgtcttc ... cggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctgtgcttccctactggatatgaattaaccaactcttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG
                         aattaac  putative branch site (score: 2)
                                   ctcttcccatc  putative PPT
                    atatgaattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttatcatatcttcattttgttggatgttttgtatacggcatatagcctgtgcttccctactggatatgaattaaccaactcttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG