1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagttcggagtattcagatgactatttttgcatagaataaacaggtttatgcttctatatggatgcttgaaaatgtgtggtttgcgtttctccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACC
species | Zea mays |
transcript | GRMZM2G016817_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTEST: gi|211447942|gb|FL055689.1|FL055689
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTT
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTTCAACATGATAEST: gi|18963781|gb|BM660626.1|BM660626
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTT-CAACATGATA
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211445815|gb|FL055672.1|FL055672
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTTCAACATGATAAATEST: gi|33090954|gb|CF050948.1|CF050948
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTT-CAACATGATAAAT
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211447949|gb|FL055696.1|FL055696
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATAEST: gi|211450062|gb|FL055706.1|FL055706
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATA
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAEST: gi|69351460|gb|DR452142.1|DR452142
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTA
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAATGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|32838714|gb|CD978395.1|CD978395
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211443698|gb|FL055660.1|FL055660
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211445824|gb|FL055681.1|FL055681
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATEST: gi|211450059|gb|FL055703.1|FL055703
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAAT
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTTCA-CATGATAAATAACTTGCCCACAATATTTGAAGTAGEST: gi|211447945|gb|FL055692.1|FL055692
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTT-CAACATGATAAATAACTTGCCCACAATATTTGAAGTAG
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211443706|gb|FL055668.1|FL055668
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGT-GCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCSACAATATTTGAAGTAGCEST: gi|211443699|gb|FL055661.1|FL055661
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211443701|gb|FL055663.1|FL055663
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTYTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCAEST: gi|20300963|gb|BQ163906.1|BQ163906
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCA
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|32838581|gb|CD978259.1|CD978259
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211445814|gb|FL055671.1|FL055671
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGCTTGGGTTTGACAAAGAG-CCAG GCGGCGACTCTTCA-CATGATAAATA-CTTGCCCACA-TATTTGAAGTAGCEST: gi|211447946|gb|FL055693.1|FL055693
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAAATAACTTGCCCCCACATATT-GAAGTAEST: gi|67015263|gb|CO444012.1|CO444012
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAA-TAACTTGCCCACA-ATATTTGAAGTA
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211445823|gb|FL055680.1|FL055680
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211443705|gb|FL055667.1|FL055667
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATEST: gi|211450060|gb|FL055704.1|FL055704
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATAT
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|20301050|gb|BQ163993.1|BQ163993
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211443697|gb|FL055659.1|FL055659
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: CTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTTGACAAAGAGGCCAG GCGGCGACTCT-CTAACATGATAAATAACTTGEST: gi|211447944|gb|FL055691.1|FL055691
genomic: CTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTT-GACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTC-AACATGATAAATAACTTG
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211447939|gb|FL055686.1|FL055686
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAKAGGCCAK GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211445826|gb|FL055683.1|FL055683
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|211447951|gb|FL055698.1|FL055698
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGARGCCAG GTGGCGACTCTTCAACATGATAAATEST: gi|211445817|gb|FL055674.1|FL055674
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAAT
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATAEST: gi|211450057|gb|FL055701.1|FL055701
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATA
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTEST: gi|211445821|gb|FL055678.1|FL055678
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTT
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTCTGACAAAGAGGCCAG GCGGCGACTCTTCEST: gi|20301051|gb|BQ163994.1|BQ163994
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTTTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|20301070|gb|BQ164013.1|BQ164013
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTTTTCAACATGATAAATAACTTGCCEST: gi|60350291|gb|DN217264.1|DN217264
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCEST: gi|32837497|gb|CD977175.1|CD977175
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
EST: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAG GCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
genomic: GCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGgtaacgattc ... tccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGC
tttatgcttctatatggatgcttgaaaatgtgtggtttgcgtttctccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACC
tttgcgtttctcctt CT-rich tract
ttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttcggagtattcagatgactatttttgcatagaataaacaggtttatgcttctatatggatgcttgaaaatgtgtggtttgcgtttctccttaacagGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgc