1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttctattataaatatccatttgaacagtccattagttcataagaatcaatatgactcttactataaacttttcggtcttcctttgcagGTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAAAATTGCAGGATGGATATTAGCAGGTGTAGCTCAAAACAGCTTGAAGTTC
species | Zea mays |
transcript | GRMZM2G016561_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAG GTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAAEST: gi|78112623|gb|DV531017.1|DV531017
genomic: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAGgttctattat ... tcctttgcagGTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAA
EST: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAG GTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAAEST: gi|71771147|gb|DR969084.1|DR969084
genomic: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAGgttctattat ... tcctttgcagGTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAA
EST: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAG GTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAAEST: gi|71426622|gb|DR807672.1|DR807672
genomic: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAGgttctattat ... tcctttgcagGTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAA
EST: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAG GTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAA
genomic: GCATCACCACCCCGATGTTTATACTCAATCCAGCATATGATGTTTGGCAGgttctattat ... tcctttgcagGTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAA
agttcataagaatcaatatgactcttactataaacttttcggtcttcctttgcagGTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAAAATTGCAGGATGGATATTAGCAGGTGTAGCTCAAAACAGCTTGAAGTTC
ctcttac putative branch site (score: 51)
cttttcggtcttcctt putative PPT
ttactataaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctattataaatatccatttgaacagtccattagttcataagaatcaatatgactcttactataaacttttcggtcttcctttgcagGTAGAGCATGTGTTGTCTCCAGAAGGTTCTGACCGTGAAAATCTATGGCAAAATTGCAGGATGGATATTAGCAGGTGTAGCTCAAAACAGCTTGAAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG