1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcagtgaccattgtctcttttttccatcatggtgttagatgttttacgtcagcagcatcttcttgtttactaaaaacaatatactgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTTAACTGAAGAACTATGTTGTGTGATACCTACAGCAAGGCACACCTTCTGA
species | Zea mays |
transcript | GRMZM2G016551_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCG ATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTTEST: gi|71438917|gb|DR819967.1|DR819967
genomic: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCGgtcagtgacc ... tgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTT
EST: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCG ATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTTEST: gi|31352717|gb|CD437074.1|CD437074
genomic: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCGgtcagtgacc ... tgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTT
EST: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCG ATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTTEST: gi|76935992|gb|DV174568.1|DV174568
genomic: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCGgtcagtgacc ... tgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTT
EST: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCG ATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTTEST: gi|71759772|gb|DR957709.1|DR957709
genomic: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCGgtcagtgacc ... tgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTT
EST: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCG ATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTT
genomic: AGTTAAGCAGATTCAATCGAAAGGGCATGTTGGTGATGATGTTCGATCCGgtcagtgacc ... tgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTT
tgttttacgtcagcagcatcttcttgtttactaaaaacaatatactgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTTAACTGAAGAACTATGTTGTGTGATACCTACAGCAAGGCACACCTTCTGA
tactaaa putative branch site (score: 35)
ttgtttactaaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgaccattgtctcttttttccatcatggtgttagatgttttacgtcagcagcatcttcttgtttactaaaaacaatatactgttgcgcagATTCTGAAGGCGAAGAGGAACATGAAGATTAACTTTTTAGGTTGAATGCTTAACTGAAGAACTATGTTGTGTGATACCTACAGCAAGGCACACCTTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG