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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacccttttgatggtatatatctgaagattggttttttatggtatgaatccaattttccctctacttaaacgtttgtcatttatgtttgggtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG

Basic information

species Zea mays
transcript GRMZM2G015730_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015730_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g17930.1 (Oryza sativa), 3'ss of exon 3
cacccttttgatggtatatatctgaagattggttttttatggtatgaatccaattttccctctacttaaa--cgtttgtcatttatgtttgggtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG
 |  ||  |    | ||     ||     || |  ||  | | || | ||  | |  |      |||  |  | | |||  ||| |||||||   |||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
-atactggtttacgcatgctcatgccacatgatgcttc-tagaattattcagactaacatgtatcttgtattcctgtgtggtttgtgtttggtctcttgcagCTATTGCAGTTAAAGAGAAACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71428245|gb|DR809295.1|DR809295
EST:     GTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAG                         CCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC
genomic: GTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAGgttagttttt ... gtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC
EST: gi|31354045|gb|CD438402.1|CD438402
EST:     TTGAACTGGCCCAGCAATACCACAAAGCTCT-TTGAAGAAAGGGATGCAG                         CCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC
genomic: TTGAACTGGCCCAGCAATACCACAAAG-T-TGTTGCAGAAAGGGATGCAGgttagttttt ... gtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC
EST: gi|166537991|gb|EG241007.1|EG241007
EST:     GTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAG                         CCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC
genomic: GTTTGAACTGGCCCAGCAATACCACAAAGTTGTTGCAGAAAGGGATGCAGgttagttttt ... gtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatccaattttccctctacttaaacgtttgtcatttatgtttgggtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG
                                              tccttgc  CT-rich tract
                                 atttatgttt  TA-rich tract