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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcgaaaatacgatattatacaaagtctcactcttctagtccccttactgatctaactttgctgcactagctttttctgtgctgtatcagaaagattgttcagaacatatgataataaaatttaacggtattcaggtttaagcgacctttaactcgcaacattttatttttcaaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTTGTTGTTGATAGCAATGACAGAGATCGTGTTGTTGAAGCAAAGGATGAGC

Basic information

species Zea mays
transcript GRMZM2G015361_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211059917|gb|FL040881.1|FL040881
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCC
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCC
EST: gi|211062868|gb|FL040893.1|FL040893
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18170805|gb|BM340645.1|BM340645
EST:     AAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18162263|gb|BM332102.1|BM332102
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|78024852|gb|DV493239.1|DV493239
EST:     GTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: GTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|40303457|gb|CK347844.1|CK347844
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059916|gb|FL040880.1|FL040880
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059912|gb|FL040876.1|FL040876
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18173662|gb|BM349050.1|BM349050
EST:     TGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGAAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: TGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056909|gb|FL040862.1|FL040862
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|84980111|gb|DW530460.1|DW530460
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18167828|gb|BM337668.1|BM337668
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056905|gb|FL040858.1|FL040858
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|78087625|gb|DV516018.1|DV516018
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211062865|gb|FL040890.1|FL040890
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32942546|gb|CF047365.1|CF047365
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|28911426|gb|BM266772.2|BM266772
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211062860|gb|FL040885.1|FL040885
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGG
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGG
EST: gi|18173412|gb|BM348800.1|BM348800
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|9255410|gb|BE345878.1|BE345878
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18175726|gb|BM350936.1|BM350936
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGAACAAG                         ATCAGACCATTGTGAAGGCGCTGTTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18173008|gb|BM348396.1|BM348396
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGAACAAG                         ATCAGACCATTGTGAAGGCGCTGTTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059918|gb|FL040882.1|FL040882
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18175414|gb|BM350750.1|BM350750
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059910|gb|FL040874.1|FL040874
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACA
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACA
EST: gi|28986306|gb|CB351070.1|CB351070
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|31250280|gb|CD219304.1|CD219304
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18169087|gb|BM338927.1|BM338927
EST:     TACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: TACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|60350035|gb|DN217008.1|DN217008
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|17931500|gb|BM268460.1|BM268460
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211234392|gb|FK959943.1|FK959943
EST:     TACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: TACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|91052746|gb|EB163164.1|EB163164
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|17931906|gb|BM268866.1|BM268866
EST:     AATACAAGACCATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|113704190|gb|EE681694.1|EE681694
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18174647|gb|BM350035.1|BM350035
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059905|gb|FL040869.1|FL040869
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32940814|gb|CF045633.1|CF045633
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGACGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211062864|gb|FL040889.1|FL040889
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211113314|gb|FL451324.1|FL451324
EST:     ATGTTGGAGGTCAGGACAAG                         ATC-GGCCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTT
genomic: ATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGG-CCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTT
EST: gi|211062869|gb|FL040894.1|FL040894
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|37385703|gb|CF630008.1|CF630008
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059909|gb|FL040873.1|FL040873
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32870464|gb|CF010146.1|CF010146
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059911|gb|FL040875.1|FL040875
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|17932493|gb|BM269453.1|BM269453
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056913|gb|FL040866.1|FL040866
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18176021|gb|BM351125.1|BM351125
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32941125|gb|CF045944.1|CF045944
EST:     ATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: ATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32851462|gb|CD991143.1|CD991143
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|47962387|gb|CN845096.1|CN845096
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|28911283|gb|BM339046.2|BM339046
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18166225|gb|BM336064.1|BM336064
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32862562|gb|CF002244.1|CF002244
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|51592624|gb|CV071770.1|CV071770
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGGTGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056910|gb|FL040863.1|FL040863
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056908|gb|FL040861.1|FL040861
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATMTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211059908|gb|FL040872.1|FL040872
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32909052|gb|CF013864.1|CF013864
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18163003|gb|BM332842.1|BM332842
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGAAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18165052|gb|BM334897.1|BM334897
EST:     GGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: GGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|5567066|gb|AI881977.1|AI881977
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056915|gb|FL040868.1|FL040868
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056914|gb|FL040867.1|FL040867
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|37391922|gb|CF633206.1|CF633206
EST:     TGGAGGTCCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTT
genomic: TGGAGGT-CAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTT
EST: gi|211056912|gb|FL040865.1|FL040865
EST:     AATACAAGAAMATTAGCTTNACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCC
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCC
EST: gi|211062861|gb|FL040886.1|FL040886
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18176494|gb|BM351427.1|BM351427
EST:     TTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: TTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32849424|gb|CD989105.1|CD989105
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|76290967|gb|DV030535.1|DV030535
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|37396771|gb|CF635679.1|CF635679
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|113704355|gb|EE681859.1|EE681859
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|101384355|gb|EB814222.1|EB814222
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|32910785|gb|CF015597.1|CF015597
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211062859|gb|FL040884.1|FL040884
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211339318|gb|FK959945.1|FK959945
EST:     TACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: TACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|17930223|gb|BM267183.1|BM267183
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|9255278|gb|BE345746.1|BE345746
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056911|gb|FL040864.1|FL040864
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18173809|gb|BM349197.1|BM349197
EST:     GGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: GGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18167118|gb|BM336957.1|BM336957
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211056907|gb|FL040860.1|FL040860
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18176263|gb|BM351281.1|BM351281
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|33103129|gb|CF063089.1|CF063089
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|45847529|gb|CN071472.1|CN071472
EST:     TGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: TGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|89252854|gb|DY624640.1|DY624640
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211062862|gb|FL040887.1|FL040887
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18176180|gb|BM351226.1|BM351226
EST:     GGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: GGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|211062867|gb|FL040892.1|FL040892
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
EST: gi|18167330|gb|BM337169.1|BM337169
EST:     AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAG                         ATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT
genomic: AATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 289

GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTTGTTGTTGATAGCAATGACAGAGATCGTGTTGTTGAAGCAAAGGATGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 108

GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTTGTTGTTGATAGCAATGACAGAGATCGTGTTGTTGAAGCAAAGGATGAGC


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 58

GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTTGTTGTTGATAGCAATGACAGAGATCGTGTTGTTGAAGCAAAGGATGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 531

GGTTTAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACTGTCTGGGATGTTGGAGGTCAGGACAAGgtacatgcga ... caaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTTGTTGTTGATAGCAATGACAGAGATCGTGTTGTTGAAGCAAAGGATGAGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtattcaggtttaagcgacctttaactcgcaacattttatttttcaaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTTGTTGTTGATAGCAATGACAGAGATCGTGTTGTTGAAGCAAAGGATGAGC
                    ctttaac  putative branch site (score: 531)
                                   ttttatttttc  putative PPT
                               aacattttatttttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatgcgaaaatacgatattatacaaagtctcactcttctagtccccttactgatctaactttgctgcactagctttttctgtgctgtatcagaaagattgttcagaacatatgataataaaatttaacggtattcaggtttaagcgacctttaactcgcaacattttatttttcaaaccccagATCAGGCCATTGTGGAGGCACTATTTCCAGAACACCCAAGGCCTTATCTTTGTTGTTGATAGCAATGACAGAGATCGTGTTGTTGAAGCAAAGGATGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG