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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aataaaaatgattcacgttgatttactgaactaaggaaagcttttgtgttctttcttggcttgctaaaacttctgtaatccagtaatcgtcctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG

Basic information

species Zea mays
transcript GRMZM2G015324_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015324_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g41510.1 (Oryza sativa), 3'ss of exon 5
aataaaaatgattcacgtt--gatttactgaactaaggaaagcttttgtgttctttct-tggcttgctaaaacttctgtaatccagtaatcgtc-ctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG
    ||| |  || || |    | | ||  |  || |  | |||||    | | | || | | | | |   |  |      || | |  |  || || || ||||| || |||||||| |||||||||||||| ||||||||||||||  |||||||||| || |||||||||||||| || |||
----aaacttctttacctctgaagtaacatatttacgacatgctttaacatacatcctattgttcgttggtaactaaaatttctattcttattctcttgtacagGTAAAACAGATGTTGATTGCTCTTCTAGGTGAATCAGAAATGAGATTATCTGATGAGATTATTGAGACAATCCTTGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71324358|gb|DR798880.1|DR798880
EST:     CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG                         GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
genomic: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: gi|78116066|gb|DV534454.1|DV534454
EST:     ATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG                         GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
genomic: ATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: gi|113703680|gb|EE681184.1|EE681184
EST:     GCACAGGGTTTATTGAACGGAAGGAG                         GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
genomic: GCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: gi|28985958|gb|CB350899.1|CB350899
EST:     TTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG                         GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
genomic: TTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
EST: gi|87155086|gb|DY399875.1|DY399875
EST:     CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG                         GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
genomic: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttctttcttggcttgctaaaacttctgtaatccagtaatcgtcctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG
                tgctaaa  putative branch site (score: 2)
                                         tcgtcct  putative PPT
                   taaaactt  TA-rich tract