1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggaatttcagagctcagggttgataattggttcttttccaaagcaatttgccttaaagtcacaacatttctttaccacttatttcaaatactgtttgcagGAACATTTGCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAA
species | Zea mays |
transcript | GRMZM2G015073_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGACAAATACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGG GAACATTTGCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTEST: gi|211154354|gb|FL118897.1|FL118897
genomic: CAGCTGACAAATACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaaatttga ... ctgtttgcagGAACATTTGCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTT
EST: CAGCTGACAAATACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGG GAACATCTGCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTT
genomic: CAGCTGACAAATACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaaatttga ... ctgtttgcagGAACATTTGCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTT
atttgccttaaagtcacaacatttctttaccacttatttcaaatactgtttgcagGAACATTTGCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAA
acttatttcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaatttcagagctcagggttgataattggttcttttccaaagcaatttgccttaaagtcacaacatttctttaccacttatttcaaatactgtttgcagGAACATTTGCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAA
- - - - - - - - - - - - - -tggttct
- - - - - - - - - - - - - - - - - - - caaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - tgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaca