1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgggatgggtaagactgcaactgctagcttataagaggctgaattctaatatattcttgcaacagtaattatctttttctttttcaaaaattgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGGTGGTGGTGGTGCGTGGGAAGTTCGACGCCGAGAAGCTCTGCAAGAAGGT
species | Zea mays |
transcript | GRMZM2G014695_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGGEST: gi|211492932|gb|FL024061.1|FL024061
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGGEST: gi|211490037|gb|FL024040.1|FL024040
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
EST: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAG AGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
genomic: CTGCTGTCGCTGCAGAGCCAAGATCACCAAGGTCCTGGACTGTCTCAAAGgtacatattt ... attgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGG
tctaatatattcttgcaacagtaattatctttttctttttcaaaaattgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGGTGGTGGTGGTGCGTGGGAAGTTCGACGCCGAGAAGCTCTGCAAGAAGGT
taattatctttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggatgggtaagactgcaactgctagcttataagaggctgaattctaatatattcttgcaacagtaattatctttttctttttcaaaaattgatgcagAGGAGTTCTGCATCGAGAAAGTGGAGTTCGATGACAAGAAGGAGAAGAAGGTGGTGGTGGTGCGTGGGAAGTTCGACGCCGAGAAGCTCTGCAAGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - -ctgcaac
- - - - - - - - - - - tgctagc
- - - - - - - - - - - - - - - - - -gaggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgc