1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataattgtcaatcatgtagttttctctttcgacataagcaatcatgtatttgtagttgctttaccactatactgaaaattcattaaaatattttgttcagGGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATTCTAGAATCAGTACGTTCATTGGTGTCTGAT
species | Zea mays |
transcript | GRMZM2G014454_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACCAAATCCATACAGATACCCAATTGGGAAAAAGCGGATGCAGCCACTG GGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATTEST: gi|91056110|gb|EB166528.1|EB166528
genomic: CACCAAATCCATACAGATACCCAATTGGGAAAAAGCGGATGCAGCCACTGgtgagttttt ... ttttgttcagGGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATT
EST: CACCAAATCCATACAGATACCCAATTGGGAAAAAGCGGATGCAGCCACTG GGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATTEST: gi|148945796|gb|EC891082.2|EC891082
genomic: CACCAAATCCATACAGATACCCAATTGGGAAAAAGCGGATGCAGCCACTGgtgagttttt ... ttttgttcagGGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATT
EST: CACCAAATCCATACAGATACCCAATTGGGAAAAAGCGGATGCAGCCACTG GGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATT
genomic: CACCAAATCCATACAGATACCCAATTGGGAAAAAGCGGATGCAGCCACTGgtgagttttt ... ttttgttcagGGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATT
gtatttgtagttgctttaccactatactgaaaattcattaaaatattttgttcagGGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATTCTAGAATCAGTACGTTCATTGGTGTCTGAT
ttttgttc CT-rich tract
tatactgaaaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattgtcaatcatgtagttttctctttcgacataagcaatcatgtatttgtagttgctttaccactatactgaaaattcattaaaatattttgttcagGGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATTCTAGAATCAGTACGTTCATTGGTGTCTGAT
- - - - - - catgtag
- - - - - - - - - - - - - - - - - - - - - catgtat