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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgtgttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG

Basic information

species Zea mays
transcript GRMZM2G014313_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g32220.1 (Oryza sativa), 3'ss of exon 3
gttctgtgttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                     || | | |   | || |  | ||  ||       | ||   |     | ||||   | |||||  |   |     |||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
--------------------gttcagtagct-tacatttcaattttcttccatcttagctaccatggctctgtttactaaacatgttgcttcaatatttttcagACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAG

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G44410.1 (Glycine max), 3'ss of exon 4
----------------------gttctgt-gttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                      || |  | | |    |   ||  | |    |  || ||| |  ||  | | |  |  |  || |  |  |   || || | |  |  |    | | ||    ||||| ||||| ||||| |||||||||||||||||||| || || || ||||
gtgttaaaattggagtttgacagtgcactagctttagattttggatcatgc-tcttgtactttt-tttcccattattaggagatgcctcactggcttttacttatgttgttttctattttcccacagACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G08370.1 (Glycine max), 3'ss of exon 1
-----------------------gttctgtg-ttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                       || || ||  |    | ||||  | ||      || ||| |  ||  | |||  |  |   |   ||  ||   | || | || |  |  | | | ||||  ||||| ||||| ||||| |||||||||||||||||||| || || || ||| 
ggtattaaaattggagtttgacagtcctctggctttagaaactggatcacgctccttgtact-tgttt--ccaattatcagatgtctcac--tagcatctacttacgttgtttcgtattttttgacaGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCA-

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 3'ss of exon 3
gttctgtgttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                  ||| ||   | ||      |  |  |   |  | | ||  |       | | |   | | | | ||||   |||    ||||||||||||| || ||||||||||| ||||| ||||| || || || |||||||
-----------------gtgagttgtatttgaaatgtttcatctatgtttttgcgttac---tggtcatttaagaaactgatatca---cttaccattttgcagACACTCACTTTTGCATGGGTCAACTTCTTCTTCTCTGGATTTGTTGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211291996|gb|FL370573.1|FL370573
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|12970851|gb|BG267190.1|BG267190
EST:     CATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: CATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211067136|gb|FL218067.1|FL218067
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTTGCATGGGTGAAC
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTT-GCATGGGTGAAC
EST: gi|211064386|gb|FL218050.1|FL218050
EST:     CATGGCCATGGACATGATGAAGAAGAACCCTATC-ATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: CATGGCCATGGACATGATGAAGAAGAACC-TATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211067130|gb|FL218061.1|FL218061
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTG
EST: gi|211159436|gb|FL370487.1|FL370487
EST:     CATGGNCATGGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTTGCATGGGTGAAC
genomic: CATGGCCATGG-ACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTT-GCATGGGTGAAC
EST: gi|211497851|gb|FL218034.1|FL218034
EST:     CATGGNCATGGACATGATGAAGAAAGA-CCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
genomic: CATGGCCATGGACATGATGAAGAA-GAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
EST: gi|15053265|gb|BI358810.1|BI358810
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|60338600|gb|DN205573.1|DN205573
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|86468606|gb|DY234976.1|DY234976
EST:     CTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: CTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211069863|gb|FL218071.1|FL218071
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211150578|gb|FL418267.1|FL418267
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211497852|gb|FL218035.1|FL218035
EST:     -CATGGNCATGGACATGATGAAGAAGAAC-TATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTTCTTT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTT-CTTT
EST: gi|211434427|gb|FL412915.1|FL412915
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
EST: gi|60401153|gb|DN233960.1|DN233960
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|71443118|gb|DR824168.1|DR824168
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211064381|gb|FL218045.1|FL218045
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGCA
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGCA
EST: gi|71324326|gb|DR798864.1|DR798864
EST:     CCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: CCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|37399865|gb|CF637274.1|CF637274
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|78121870|gb|DV540254.1|DV540254
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211109231|gb|FL386007.1|FL386007
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGG
EST: gi|45847449|gb|CN071392.1|CN071392
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|31356975|gb|CD441332.1|CD441332
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211498980|gb|FL377920.1|FL377920
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211291993|gb|FL370570.1|FL370570
EST:     ACATGGNCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211497850|gb|FL218033.1|FL218033
EST:     CATGGGCATGGACATGATGAAAGAAGAAC-TATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: CATGGCCATGGACATGATGAA-GAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|50337385|gb|CO532511.1|CO532511
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211099802|gb|FL386852.1|FL386852
EST:     ACATGGCCATGGACATGATGAAGAAGAAC-TATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGG
EST: gi|211067129|gb|FL218060.1|FL218060
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|71443117|gb|DR824167.1|DR824167
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGG
EST: gi|211069861|gb|FL218069.1|FL218069
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|32936209|gb|CF041021.1|CF041021
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|94477440|gb|EB706398.1|EB706398
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211011987|gb|FL416045.1|FL416045
EST:     ACATGGCCATGGACATGATGAAGNAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|71446698|gb|DR827748.1|DR827748
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|91055764|gb|EB166182.1|EB166182
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211064382|gb|FL218046.1|FL218046
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGA
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGA
EST: gi|15545720|gb|BI643514.1|BI643514
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211482792|gb|FL423815.1|FL423815
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|78025548|gb|DV493935.1|DV493935
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211212163|gb|FL396523.1|FL396523
EST:     TGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: TGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211434223|gb|FL403309.1|FL403309
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|60398183|gb|DN230999.1|DN230999
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211533497|gb|FL409016.1|FL409016
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGC
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGC
EST: gi|211064385|gb|FL218049.1|FL218049
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|148954192|gb|EC899598.2|EC899598
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|31356132|gb|CD440489.1|CD440489
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211064387|gb|FL218051.1|FL218051
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|32851266|gb|CD990947.1|CD990947
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|15590500|gb|BI675116.1|BI675116
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|14202406|gb|BG836083.1|BG836083
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|67020108|gb|CO448857.1|CO448857
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|32864289|gb|CF003971.1|CF003971
EST:     ATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|94473567|gb|EB702525.1|EB702525
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|31356090|gb|CD440447.1|CD440447
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|78090530|gb|DV518904.1|DV518904
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|60350629|gb|DN217602.1|DN217602
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|15590499|gb|BI675115.1|BI675115
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|50337384|gb|CO532510.1|CO532510
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|71324327|gb|DR798865.1|DR798865
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|91875885|gb|EB405842.1|EB405842
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|71439477|gb|DR820527.1|DR820527
EST:     TGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: TGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211407987|gb|FL375638.1|FL375638
EST:     -CATGGCCATGGACATGATGAAGAAGA-CCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTT
EST: gi|4886165|gb|AI677285.1|AI677285
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACNCTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211497848|gb|FL218031.1|FL218031
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTC-TCAG                         ACACTTACATTTGCAT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCAT
EST: gi|8367730|gb|BE050675.1|BE050675
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCA
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCA
EST: gi|60356673|gb|DN223646.1|DN223646
EST:     GAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: GAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211069864|gb|FL218072.1|FL218072
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211063347|gb|FL405204.1|FL405204
EST:     TGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: TGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|31356942|gb|CD441299.1|CD441299
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|32937025|gb|CF041844.1|CF041844
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 254

TCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 280

TCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 295

TCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 314

TCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                                            tgttttt  CT-rich tract
                   tatgttatattaacat  TA-rich tract