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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgtgttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG

Basic information

species Zea mays
transcript GRMZM2G014313_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g32220.1 (Oryza sativa), 3'ss of exon 3
gttctgtgttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                     || | | |   | || |  | ||  ||       | ||   |     | ||||   | |||||  |   |     |||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
--------------------gttcagtagct-tacatttcaattttcttccatcttagctaccatggctctgtttactaaacatgttgcttcaatatttttcagACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAG

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G44410.1 (Glycine max), 3'ss of exon 4
----------------------gttctgt-gttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                      || |  | | |    |   ||  | |    |  || ||| |  ||  | | |  |  |  || |  |  |   || || | |  |  |    | | ||    ||||| ||||| ||||| |||||||||||||||||||| || || || ||||
gtgttaaaattggagtttgacagtgcactagctttagattttggatcatgc-tcttgtactttt-tttcccattattaggagatgcctcactggcttttacttatgttgttttctattttcccacagACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G08370.1 (Glycine max), 3'ss of exon 1
-----------------------gttctgtg-ttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                       || || ||  |    | ||||  | ||      || ||| |  ||  | |||  |  |   |   ||  ||   | || | || |  |  | | | ||||  ||||| ||||| ||||| |||||||||||||||||||| || || || ||| 
ggtattaaaattggagtttgacagtcctctggctttagaaactggatcacgctccttgtact-tgttt--ccaattatcagatgtctcac--tagcatctacttacgttgtttcgtattttttgacaGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCA-

upper sequence: GRMZM2G014313_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 3'ss of exon 3
gttctgtgttccgtacactgatttacttgtggtgcactatagttggctaatcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                  ||| ||   | ||      |  |  |   |  | | ||  |       | | |   | | | | ||||   |||    ||||||||||||| || ||||||||||| ||||| ||||| || || || |||||||
-----------------gtgagttgtatttgaaatgtttcatctatgtttttgcgttac---tggtcatttaagaaactgatatca---cttaccattttgcagACACTCACTTTTGCATGGGTCAACTTCTTCTTCTCTGGATTTGTTGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211291996|gb|FL370573.1|FL370573
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211067136|gb|FL218067.1|FL218067
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTTGCATGGGTGAAC
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTT-GCATGGGTGAAC
EST: gi|211064386|gb|FL218050.1|FL218050
EST:     CATGGCCATGGACATGATGAAGAAGAACCCTATC-ATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: CATGGCCATGGACATGATGAAGAAGAACC-TATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211067130|gb|FL218061.1|FL218061
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTG
EST: gi|211159436|gb|FL370487.1|FL370487
EST:     CATGGNCATGGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTTGCATGGGTGAAC
genomic: CATGGCCATGG-ACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTT-GCATGGGTGAAC
EST: gi|14202406|gb|BG836083.1|BG836083
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211497851|gb|FL218034.1|FL218034
EST:     CATGGNCATGGACATGATGAAGAAAGA-CCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
genomic: CATGGCCATGGACATGATGAAGAA-GAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
EST: gi|15053265|gb|BI358810.1|BI358810
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211069863|gb|FL218071.1|FL218071
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211497852|gb|FL218035.1|FL218035
EST:     -CATGGNCATGGACATGATGAAGAAGAAC-TATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTTCTTT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTT-CTTT
EST: gi|211434427|gb|FL412915.1|FL412915
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGT
EST: gi|211064381|gb|FL218045.1|FL218045
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGCA
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGCA
EST: gi|211109231|gb|FL386007.1|FL386007
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGG
EST: gi|211498980|gb|FL377920.1|FL377920
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211291993|gb|FL370570.1|FL370570
EST:     ACATGGNCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211069861|gb|FL218069.1|FL218069
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211497850|gb|FL218033.1|FL218033
EST:     CATGGGCATGGACATGATGAAAGAAGAAC-TATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: CATGGCCATGGACATGATGAA-GAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|50337385|gb|CO532511.1|CO532511
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211099802|gb|FL386852.1|FL386852
EST:     ACATGGCCATGGACATGATGAAGAAGAAC-TATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGG
EST: gi|94477440|gb|EB706398.1|EB706398
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211067129|gb|FL218060.1|FL218060
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|71443117|gb|DR824167.1|DR824167
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGG
EST: gi|32936209|gb|CF041021.1|CF041021
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211011987|gb|FL416045.1|FL416045
EST:     ACATGGCCATGGACATGATGAAGNAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211064382|gb|FL218046.1|FL218046
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGA
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGA
EST: gi|15545720|gb|BI643514.1|BI643514
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211482792|gb|FL423815.1|FL423815
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211533497|gb|FL409016.1|FL409016
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGC
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAGC
EST: gi|211064385|gb|FL218049.1|FL218049
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211064387|gb|FL218051.1|FL218051
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|15590500|gb|BI675116.1|BI675116
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211069864|gb|FL218072.1|FL218072
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
EST: gi|211407987|gb|FL375638.1|FL375638
EST:     -CATGGCCATGGACATGATGAAGAAGA-CCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTT
EST: gi|211497848|gb|FL218031.1|FL218031
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTC-TCAG                         ACACTTACATTTGCAT
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCAT
EST: gi|8367730|gb|BE050675.1|BE050675
EST:     ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAG                         ACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCA
genomic: ACATGGCCATGGACATGATGAAGAAGAACCTATCCATGATAGTTCCTCAGgttctgtgtt ... gtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgtgtggcattctaccgtatgttatattaacatcataacttgtgtttttgcagACACTTACATTTGCATGGGTGAACTTTTTCTTTTCAGGTTTCGTTGCAG
                                            tgttttt  CT-rich tract
                   tatgttatattaacat  TA-rich tract