1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagtactctgtggtgtttggtagttttcagtagataaaactgtggccggggcctgggaagcttgcatgttcagtttatttatacatatctataaaagttttcgttgaaatgctaccctacaagttttggaatttcttatttacttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGCATTGCATGCAATTGATGGTATTCCTAAGAACTGCCAGATATTGCATGT
species | Zea mays |
transcript | GRMZM2G013890_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATG GACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGEST: gi|60396671|gb|DN229539.1|DN229539
genomic: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagtactc ... cttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
EST: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATG GACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGEST: gi|211238346|gb|FL044424.1|FL044424
genomic: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagtactc ... cttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
EST: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATG GACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGEST: gi|84969865|gb|DW468276.1|DW468276
genomic: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagtactc ... cttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
EST: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATG GACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGEST: gi|71417759|gb|DR804201.1|DR804201
genomic: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagtactc ... cttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
EST: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATG GACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGEST: gi|76914101|gb|DV165406.1|DV165406
genomic: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagtactc ... cttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
EST: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATG GACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGEST: gi|60351172|gb|DN218145.1|DN218145
genomic: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagtactc ... cttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
EST: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATG GACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
genomic: TGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagtactc ... cttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGG
ttttcgttgaaatgctaccctacaagttttggaatttcttatttacttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGCATTGCATGCAATTGATGGTATTCCTAAGAACTGCCAGATATTGCATGT
tttcttatttactt CT-rich tract
aatttcttatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtactctgtggtgtttggtagttttcagtagataaaactgtggccggggcctgggaagcttgcatgttcagtttatttatacatatctataaaagttttcgttgaaatgctaccctacaagttttggaatttcttatttacttgtttcagGACTTGTTGGAAGAAACGGGACTGGGAAGACATCTTTTCTCAGAGCGATGGCATTGCATGCAATTGATGGTATTCCTAAGAACTGCCAGATATTGCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC