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gtgagaatttttccatcttgatgattattccttgtaagattcattgtttttatgtgtataatctcacagttgttcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCAAAGAGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAG
species | Zea mays |
transcript | GRMZM2G013750_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|13557648|gb|BG549004.1|BG549004
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|13316089|gb|BG410536.1|BG410536
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|32846815|gb|CD986496.1|CD986496
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|31909275|gb|CD650837.1|CD650837
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|13316088|gb|BG410535.1|BG410535
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|4753426|gb|AI657336.1|AI657336
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|211157243|gb|FL334276.1|FL334276
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGAGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|9952312|gb|BE638895.1|BE638895
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGAGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|148974705|gb|EE025514.2|EE025514
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|211448768|gb|FL325252.1|FL325252
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGAGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|20803197|gb|BQ294247.1|BQ294247
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGAGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCEST: gi|32943967|gb|CF048786.1|CF048786
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
EST: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAA ATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
genomic: ACACACGCGTCGAGCTAATCAAAACACTGAGCAGCGTCTCTGCTGGCAAAgtgagaattt ... tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATC
tccttgtaagattcattgtttttatgtgtataatctcacagttgttcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCAAAGAGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAG
atctcac putative branch site (score: 3)
ttcatct putative PPT
tttttatgtgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaatttttccatcttgatgattattccttgtaagattcattgtttttatgtgtataatctcacagttgttcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCAAAGAGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG