1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtctttaactaccatcaccttcctaaacttatttgttctcataagtatggaaaataaggtcctaatcttgtgccaactttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCTCCAAGGTGCTCTGAGCTCCCTGAACTTGGTCGCATACGTGACATTTTT
species | Zea mays |
transcript | GRMZM2G012413_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|148999901|gb|EE036946.2|EE036946
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|149076185|gb|EE164779.2|EE164779
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|211369839|gb|FL433659.1|FL433659
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: ATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|211434274|gb|FL405875.1|FL405875
genomic: ATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|148945139|gb|EC890337.2|EC890337
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|20802742|gb|BQ293792.1|BQ293792
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|78111386|gb|DV529783.1|DV529783
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: TCTTCTGCGAGCTGATTGTTACACGCCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|71322908|gb|DR798137.1|DR798137
genomic: TCTTCTGCGAGCTGATTGTTACACGCC-TTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|71767968|gb|DR965905.1|DR965905
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|86466457|gb|DY232827.1|DY232827
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAGTGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCEST: gi|28910124|gb|CB331273.1|CB331273
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGC
EST: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAA GGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCA
genomic: CTCTTCTGCGAGCTGATTGTTACACGCCTTCCTATCATCGCAAAACAGAAgtttgtcttt ... ttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCA
tgttctcataagtatggaaaataaggtcctaatcttgtgccaactttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCTCCAAGGTGCTCTGAGCTCCCTGAACTTGGTCGCATACGTGACATTTTT
tcctaat putative branch site (score: 43)
ctttttattc putative PPT
aactttttatt TA-rich tract