1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggcctaatttatttaaccatgagttcgttagagttcacactgttggctttggaacttttttggacttactgtttccttcttttgctatacaatgccccagTCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAGGCACTCAAGCAAGTCCTTACTACACAGTCACTCATTACACAGAGTTTGC
species | Zea mays |
transcript | GRMZM2G011777_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTTCATGCAAG TCCAGATGCCATACATGGTATTCACEST: gi|211073815|gb|FL047510.1|FL047510
genomic: TGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTTCATGCAAGgtagtgctca ... aatgccccagTCCAGATGCCATACATGGTATTCAC
EST: TGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTTCATGCAAG TCCAGATGCCATACATGGTATTTACAGGACTTGAEST: gi|60337665|gb|DN204638.1|DN204638
genomic: TGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTTCATGCAAGgtagtgctca ... aatgccccagTCCAGATGCCATACATGGTATTCACAGGACTTGA
EST: ATGTTCATGCAAG TCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAGEST: gi|78115194|gb|DV533582.1|DV533582
genomic: ATGTTCATGCAAGgtagtgctca ... aatgccccagTCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAG
EST: TGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTTCATGCAAG TCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAGEST: gi|71434448|gb|DR815498.1|DR815498
genomic: TGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTTCATGCAAGgtagtgctca ... aatgccccagTCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAG
EST: GTTCATGCAAG TCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAG
genomic: GTTCATGCAAGgtagtgctca ... aatgccccagTCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAG
gctttggaacttttttggacttactgtttccttcttttgctatacaatgccccagTCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAGGCACTCAAGCAAGTCCTTACTACACAGTCACTCATTACACAGAGTTTGC
gacttac putative branch site (score: 2)
aactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcctaatttatttaaccatgagttcgttagagttcacactgttggctttggaacttttttggacttactgtttccttcttttgctatacaatgccccagTCCAGATGCCATACATGGTATTCACAGGACTTGAAGACTATAAAGCACGAGGCACTCAAGCAAGTCCTTACTACACAGTCACTCATTACACAGAGTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG