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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatttatatatcctaggtcttgatttatttacattgatttgtagtaaactctgtttccttgaaatgtaagatgttccccattatttgctgaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG

Basic information

species Zea mays
transcript GRMZM2G011518_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011518_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g42940.3 (Oryza sativa), 3'ss of exon 3
tgatttatatatcctaggt-cttgatttattta-----cattgatttgtagtaaactctgtttccttgaaatgtaagatgttccccattatttgctgaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG----------------------------------------
    ||| | ||||  | | ||| ||||| |||     ||    || ||   | |  |  ||| ||||   |||||  |  || |  || |||  | |||| |||||| ||||| |||||||| |||||||||||||| || ||||||||||| || || ||||||                                        
----ttacagatccacgttgctttatttaattagcacgcacattttggtttcagaaacacttttcttgcgttgtaaattcctctc--ttcttttgtaaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAAATAATTTATTATGAGGCAGCAA

upper sequence: GRMZM2G011518_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 3
tgatttatatatcctaggt-cttgatttattta-----cattgatttgtagtaaactctgtttccttgaaatgtaagatgttccccattatttgctgaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG
    ||| | ||||  | | ||| ||||| |||     ||    || ||   | |  |  ||| ||||   |||||  |  || |  || |||  | |||| |||||| ||||| |||||||| |||||||||||||| || ||||||||||| || || ||||||
----ttacagatccacgttgctttatttaattagcacgcacattttggtttcagaaacacttttcttgcgttgtaaattcctctc--ttcttttgtaaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211535182|gb|FL238609.1|FL238609
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: gi|166467014|gb|EG122028.1|EG122028
EST:     GGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAG
genomic: GGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAG
EST: gi|21330796|gb|BQ486177.1|BQ486177
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: gi|60399000|gb|DN231816.1|DN231816
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: gi|211532193|gb|FL238605.1|FL238605
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: gi|211532190|gb|FL238602.1|FL238602
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: gi|211535183|gb|FL238610.1|FL238610
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGGAGAGCCAGGGC
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGG-AGAGCCAGGGC
EST: gi|76016402|gb|DT943572.1|DT943572
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
EST: gi|211532184|gb|FL238596.1|FL238596
EST:     AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGGAGAGCCA
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGG-AGAGCCA
EST: gi|32802499|gb|CD954735.1|CD954735
EST:     GGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTG                         ATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG
genomic: AGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactc ... gaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactctgtttccttgaaatgtaagatgttccccattatttgctgaacttgcagATTTACGTGGTTGATTCACTGGATAGAGAGAGAATCGGGAGAGCCAGGGCGGAGTTTCAG
                                   attattt  TA-rich tract