1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcacttcacatcagtagcacttattctgaattctgcccgaacttgcatctgcttacagaaatttactgattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGAATTCTTAAATTGGTTGAAGGAAATAAGAAGTTTCTGGCAATTGATAAAG
species | Zea mays |
transcript | GRMZM2G011479_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACA CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGAEST: gi|60394686|gb|DN227556.1|DN227556
genomic: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACAgtaagcactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGA
EST: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACA CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGAEST: gi|86469146|gb|DY235516.1|DY235516
genomic: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACAgtaagcactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGA
EST: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACA CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGAEST: gi|24934419|gb|CA452637.1|CA452637
genomic: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACAgtaagcactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGA
EST: ACAATTATTGTTTCAATCAGTGGAACA CTAGCTGCAGCGGTGGCCTTCCTTATGGCTAGATACTTCGCCAGAGATAGAEST: gi|91049969|gb|EB160387.1|EB160387
genomic: ACAATTATTGTTTCAATCAGTGGAACAgtaagcactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGA
EST: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACA CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGA
genomic: TATTATTTGGTAGTGTGACCGGTACAATTATTGTTTCAATCAGTGGAACAgtaagcactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGA
attctgaattctgcccgaacttgcatctgcttacagaaatttactgattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGAATTCTTAAATTGGTTGAAGGAAATAAGAAGTTTCTGGCAATTGATAAAG
tactgat putative branch site (score: 118)
aaatttactgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacttcacatcagtagcacttattctgaattctgcccgaacttgcatctgcttacagaaatttactgattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTCGCCAGAGAGAGAATTCTTAAATTGGTTGAAGGAAATAAGAAGTTTCTGGCAATTGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT