1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttaagatgcttctgaagttgctgtttgaggatttgtttcatgacttgcagaatccaataacatctcttagaaatgtatttcttattacactttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAGTCACATTGCAAACTTTAGAATCTGAAGGCCAGAAAATGGACGGCATGG
species | Zea mays |
transcript | GRMZM2G011404_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTGCATCTTTGGRAATTCTGATCGACTGAGGACTCCATTTAGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAEST: gi|211036067|gb|FL343698.1|FL343698
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACGgtatgatatt ... actttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
EST: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAEST: gi|67013916|gb|CO442665.1|CO442665
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACGgtatgatatt ... actttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
EST: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTAGCAAAACGgtatgatatt ... actttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
cttgcagaatccaataacatctcttagaaatgtatttcttattacactttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAGTCACATTGCAAACTTTAGAATCTGAAGGCCAGAAAATGGACGGCATGG
caataac putative branch site (score: 92)
cactttc putative PPT
ttagaaatgtatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaagatgcttctgaagttgctgtttgaggatttgtttcatgacttgcagaatccaataacatctcttagaaatgtatttcttattacactttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAGTCACATTGCAAACTTTAGAATCTGAAGGCCAGAAAATGGACGGCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -gcttctg
- - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca