Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttaccaaaagcattgaaaatatgtgaaaaatgtttaacatggaaaatgtttaactagttttgtttaatcatttttatttgtgttctgtatcaagtagGTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAAT

Basic information

species Zea mays
transcript GRMZM2G011136_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011136_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 3'ss of exon 3
tttttaccaaaagc---attgaaaatat-gtgaaaaatgtttaacatggaaaatgtttaactagttttgt-ttaatcatttttatttgtgttctgtatcaagtagGTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAAT
 |  | | | |  |   || || |   | || | |||  | |  ||| ||      |||  |  |  ||| | | |  |   | ||||   ||||| | ||  |||| |||||||||||||||||||||||| |||| |||||||||| |||| |||| ||||||||||||||| |  | || ||||| || |||||||||||  
atgatgcaagacacccaatcgacatcgttgtaacaaagctcttgcatagag-----ttattttatcctgtgtgagttgtaactgtttggtctctgttttaatcagGTTATGGAAAAGAGCAACTTCAAGTTGTTATCTGATGAAGAGTATGATGTTGCACAATCTGGAAAATATCTTCTAAACCTTCCCATAAAAGTTGATGAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211454006|gb|FL153959.1|FL153959
EST:     CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCAG                         GTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT
genomic: CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCAGgtcggttagg ... tatcaagtagGTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT
EST: gi|211454007|gb|FL153960.1|FL153960
EST:     CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCGG                         GTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT
genomic: CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCAGgtcggttagg ... tatcaagtagGTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT
EST: gi|76916271|gb|DV166314.1|DV166314
EST:     CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCAG                         GTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT
genomic: CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCAGgtcggttagg ... tatcaagtagGTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT
EST: gi|13559022|gb|BG550377.1|BG550377
EST:     CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCAG                         GTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT
genomic: CGGAAGAAATCGAGACCCTCGAATTCAATTTCATGACATATCTTTTCCAGgtcggttagg ... tatcaagtagGTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgtttaactagttttgtttaatcatttttatttgtgttctgtatcaagtagGTGATGGAAAAGAGCAACTTCAAGTTGCTATCAGATGAAGAGTTTGATATTGCGCAATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAAT
      tttaactagttttgtt  TA-rich tract