1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcagtagtataatgtgtactagtagttgaagtaatatatcaagctactcatcgttcttagatcttcttgtctgttgacttgtggtgtttgtgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGCGGAAGTACGCTATCAAGGCCTAGATTAGTGAAAGAACAGCTTTTATCC
species | Zea mays |
transcript | GRMZM2G010599_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|30306407|gb|CD001080.1|CD001080
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211335323|gb|FK988235.1|FK988235
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|67020323|gb|CO449072.1|CO449072
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211328832|gb|FK988196.1|FK988196
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|67024630|gb|CO453379.1|CO453379
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAATTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|89755381|gb|DY685822.1|DY685822
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|60400231|gb|DN233038.1|DN233038
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|32930463|gb|CF035275.1|CF035275
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|18166672|gb|BM336511.1|BM336511
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGAAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|67023749|gb|CO452498.1|CO452498
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|15199222|gb|BI423722.1|BI423722
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|67023906|gb|CO452655.1|CO452655
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211328833|gb|FK988197.1|FK988197
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|18176750|gb|BM351683.1|BM351683
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|37379912|gb|CF626727.1|CF626727
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211250381|gb|FL431483.1|FL431483
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|30704600|gb|CD058563.1|CD058563
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|30307036|gb|CD001709.1|CD001709
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211254801|gb|FL420516.1|FL420516
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211333150|gb|FK988217.1|FK988217
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|4730667|gb|AI649833.1|AI649833
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211333162|gb|FK988229.1|FK988229
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|67022317|gb|CO451066.1|CO451066
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211330991|gb|FK988208.1|FK988208
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGCGAGAAGTATTTTCCCATGEST: gi|30704590|gb|CD058562.1|CD058562
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211335320|gb|FK988232.1|FK988232
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211330996|gb|FK988213.1|FK988213
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGEST: gi|211330990|gb|FK988207.1|FK988207
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
actcatcgttcttagatcttcttgtctgttgacttgtggtgtttgtgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGCGGAAGTACGCTATCAAGGCCTAGATTAGTGAAAGAACAGCTTTTATCC
tgttgac putative branch site (score: 3)
tgttcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagtagtataatgtgtactagtagttgaagtaatatatcaagctactcatcgttcttagatcttcttgtctgttgacttgtggtgtttgtgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATGCGGAAGTACGCTATCAAGGCCTAGATTAGTGAAAGAACAGCTTTTATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
gcagtag
- - - - - - - - - - - - - - - - - - - - - gctactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtg