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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttataacaggatttagccgaacagatacctgagttttcatgcctccaagagtgaatagatacctgagttcactaatttcatgagcatctcttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTGATGTCATTGAGGTAATTTCTATCCTTGGTGTTTTGCGCAGCACCTGAAA

Basic information

species Zea mays
transcript GRMZM2G010146_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94477699|gb|EB706657.1|EB706657
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATNCA-TACGTGAGAACAATAATTT
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGAT-CAATACGTGAGAACAATAATTT
EST: gi|71425314|gb|DR806606.1|DR806606
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTG
EST: gi|148944695|gb|EC889832.2|EC889832
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|78083968|gb|DV512361.1|DV512361
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCCA                         GTGCGAACTTTTTCA-CAAACATCTCGATCAATACGTGAGAACAATAATTT
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTT-CAACAAACATCTCGATCAATACGTGAGAACAATAATTT
EST: gi|71436637|gb|DR817687.1|DR817687
EST:     GGGAATACGTTGTAAAAAATCCTCTGTATGGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATC
genomic: TGGAATACGTTGTAAAAAATCCTCTGTATG-CTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATC
EST: gi|71757992|gb|DR955929.1|DR955929
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|93284352|gb|EB676616.1|EB676616
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAA-CATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|148932965|gb|EE285816.2|EE285816
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|91872814|gb|EB402771.1|EB402771
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|71434336|gb|DR815386.1|DR815386
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|71443624|gb|DR824674.1|DR824674
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|71302504|gb|DR787370.1|DR787370
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|148930227|gb|EC872669.2|EC872669
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
EST: gi|101393644|gb|EB818754.1|EB818754
EST:     GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAA                         GTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG
genomic: GTGGAATACGTTGTAAAAAATCCTCTGTATGCTCCTGGAACACCAATCAAgtaagttttt ... ttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagagtgaatagatacctgagttcactaatttcatgagcatctcttatttgtagGTGCGAACTTTTCAACAAACATCTCGATCAATACGTGAGAACAATAATTTGATGTCATTGAGGTAATTTCTATCCTTGGTGTTTTGCGCAGCACCTGAAA
                        cactaat  putative branch site (score: 2)
                                         tctcttattt  putative PPT
                           taatttcat  TA-rich tract