1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gattctttaaaccacagttataatgcagtagtgttcacctgtcttgcttcttgggttcatcatgatcctgacatctatgcttctacggtcctaccttcagGTTATCACTGGCAAAGGGAATGATACCTATCAGATTGAAGGCGATAAAAATGAATTTTTTGATGACAGAGAAGAGTGCCGAGAAGCATTACAATACGTCG
species | Zea mays |
transcript | GRMZM2G009070_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGCAGTTCGAGCTGCTGTTGCAATGGGTGAACAAGGCGATGTGGTC GTTATCACTGGCAAAGGGAATGATACCTATCAGATTGAAGGCGATAAAAAT
genomic: GAGTTGCAGTTCGAGCTGCTGTTGCAATGGGTGAACAAGGCGATGTGGTCgtaagtttct ... ctaccttcagGTTATCACTGGCAAAGGGAATGATACCTATCAGATTGAAGGCGATAAAAAT
gcttcttgggttcatcatgatcctgacatctatgcttctacggtcctaccttcagGTTATCACTGGCAAAGGGAATGATACCTATCAGATTGAAGGCGATAAAAATGAATTTTTTGATGACAGAGAAGAGTGCCGAGAAGCATTACAATACGTCG
tcctgac putative branch site (score: 30)
tcctaccttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattctttaaaccacagttataatgcagtagtgttcacctgtcttgcttcttgggttcatcatgatcctgacatctatgcttctacggtcctaccttcagGTTATCACTGGCAAAGGGAATGATACCTATCAGATTGAAGGCGATAAAAATGAATTTTTTGATGACAGAGAAGAGTGCCGAGAAGCATTACAATACGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - -aaccaca
- - - - - - - - - - - - gcagtag
- - - - - - - - - - - - - - - - - tcacctg
- - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatcctg