1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcacgcattttttttctctctctcaaatgccattcataatttgcagcacatgcattagtttccaagctgaacttccgttccccgacctctgtgctgtgcagACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTACAAGCACCTCATCCCCACGCCGAAGGATCAGTGCAGCAAGCCTCTCCAGCT
species | Zea mays |
transcript | GRMZM2G009045_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT ACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTACAEST: gi|13150488|gb|BG320810.1|BG320810
genomic: GCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTTgtaagcacgc ... tgctgtgcagACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTACA
EST: GCTATTCAGAGGACTGGTTCCTCTTTTGGGGCGACAGATTCCTT ACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTACAEST: gi|149096561|gb|EE182315.2|EE182315
genomic: GCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTTgtaagcacgc ... tgctgtgcagACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTACA
EST: GCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT ACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTANC
genomic: GCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTTgtaagcacgc ... tgctgtgcagACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTA-C
cacatgcattagtttccaagctgaacttccgttccccgacctctgtgctgtgcagACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTACAAGCACCTCATCCCCACGCCGAAGGATCAGTGCAGCAAGCCTCTCCAGCT
cctctgt CT-rich tract
attagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacgcattttttttctctctctcaaatgccattcataatttgcagcacatgcattagtttccaagctgaacttccgttccccgacctctgtgctgtgcagACACCATGATGAAGTTCGCGACGTACGAGAACATCGTGGAGATGACCTACAAGCACCTCATCCCCACGCCGAAGGATCAGTGCAGCAAGCCTCTCCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG