1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatcacagcttgtacttagtttttgcttgttttctttattgattgtttgaggttaacaaagtccccccccccccaaccaccaaatgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCCCAGTTTGCAGCAGAAGCAACTTTGCGAAGAGTACATGCAGCCCAGAAAG
species | Zea mays |
transcript | GRMZM2G008556_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA AATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCCEST: gi|78082127|gb|DV510539.1|DV510539
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAAgtatcacagc ... atgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGNAAGCAAA AATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCCEST: gi|71426785|gb|DR807835.1|DR807835
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAAgtatcacagc ... atgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA AATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCCEST: gi|26456440|gb|CA828023.1|CA828023
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAAgtatcacagc ... atgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
EST: GAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA AATCTTGAAGTTAAAAAGATAAACGATGAGAAAAAAGCTGCATTGGCTGCCEST: gi|149109119|gb|EE190019.2|EE190019
genomic: GAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAAgtatcacagc ... atgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA AATCTTGAAGTTTAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCCEST: gi|20803029|gb|BQ294079.1|BQ294079
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAAgtatcacagc ... atgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
EST: CTCTCCTCGAAAGCAAA AATCTTGAAGTTAAAAAGATAAACGATGAGAAAAAAGCTGCATTGGCTGCCEST: gi|71448531|gb|DR829581.1|DR829581
genomic: CTCTCCTCGAAAGCAAAgtatcacagc ... atgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA AATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAAgtatcacagc ... atgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCC
ttgattgtttgaggttaacaaagtccccccccccccaaccaccaaatgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCCCAGTTTGCAGCAGAAGCAACTTTGCGAAGAGTACATGCAGCCCAGAAAG
ggttaac putative branch site (score: 78)
ttaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcacagcttgtacttagtttttgcttgttttctttattgattgtttgaggttaacaaagtccccccccccccaaccaccaaatgcctgcagAATCTTGAAGTTAAAAAGATAAATGATGAGAAAAAAGCTGCATTGGCTGCCCAGTTTGCAGCAGAAGCAACTTTGCGAAGAGTACATGCAGCCCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA