1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctaaatgtcgcgtggctcatttatattcccattttatatggctgtgtttttttacattactctgcatgttgaaagttgtgtgttatctttttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAACAACTATGTTGGTTTGCATGATAGGCTTGTTACAATCACAGGGACCTTT
species | Zea mays |
transcript | GRMZM2G008410_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAATAGCTCTTGTGGTGGGATAATTGGGAAAAGGTGGAGCAACAATAAA GTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAAEST: gi|20300623|gb|BQ163566.1|BQ163566
genomic: CTAATAGCTCTTGTGGTGGTATAATT-GGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
EST: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAA GTCGCTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAAEST: gi|87151880|gb|DY396669.1|DY396669
genomic: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
EST: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAA GTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAAEST: gi|9028619|gb|BE238659.1|BE238659
genomic: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
EST: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAA GTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAAEST: gi|19770173|gb|BQ034894.1|BQ034894
genomic: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
EST: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAA GTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAAEST: gi|60394388|gb|DN227258.1|DN227258
genomic: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
EST: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAA GTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAAEST: gi|148995842|gb|EE035078.2|EE035078
genomic: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
EST: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAA GTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAAEST: gi|78114793|gb|DV533181.1|DV533181
genomic: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
EST: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAA GTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
genomic: CCTAATAGCTCTTGTGGTGGTATAATTGGTAAAGGTGGAGCAACAATAAAgtatgtatct ... ttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAA
gtttttttacattactctgcatgttgaaagttgtgtgttatctttttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAACAACTATGTTGGTTTGCATGATAGGCTTGTTACAATCACAGGGACCTTT
tgttatctttttctct CT-rich tract
ttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaatgtcgcgtggctcatttatattcccattttatatggctgtgtttttttacattactctgcatgttgaaagttgtgtgttatctttttctcttcagGTCGTTTATTGAAGAATCACATGCTGGAATCAAAATCTCGCCACAGGATAACAACTATGTTGGTTTGCATGATAGGCTTGTTACAATCACAGGGACCTTT
- - - - - - - - - - - - - - - - - - -atggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt