Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatcatgaacagtagtaccactgtaccagctaggtaatagaagaaacgcccatcttataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG

Basic information

species Zea mays
transcript GRMZM2G008232_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 4
aaatcatgaacagtagt-accactgtaccagctaggtaatagaagaaacgcccatctt----ataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG
 | |  ||| |  | || |  ||  | | | ||            |  |   ||| ||    | || ||| |         |  | | || | ||||     ||| |||| || |||||||||||| |||| ||||| || ||||||||||| ||||| || || || ||||| || || || ||||| |||||||| || || |
gacttgtgatctttggttatgaccctgctacctcccacccccggtatccctacatgttttccacaaattgaaagatcttacactttttttcactgtg-----cagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG

upper sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G09570.1 (Glycine max), 3'ss of exon 4
------aaatcatgaacagtagtaccactgtaccagctaggtaatagaagaaacgcccatcttataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG
        ||| ||          |  ||   ||          ||     | |     |   |||| ||  |         |  |   ||   ||||     ||| |||| || |||||||||||| |||| |||||||| |||||||| || ||||| || || || ||||| || || |||||||| ||||||||||| || |
tacttgtgatcttgggttaagaccctgctacccccaactcccggtatcccga-catgttttccataaattcaaagatcttatactttccttcgctgtg-----cagGTTGCAAATATGATAAGGTTTTTGGTTGATAGCTATAACAAGCCTGTTCCTGCAATACTTGAAATCCCTTCTAAAGACCATCCTTATGATCCAGCACATG

upper sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
----aaatcatgaacagtagtaccactgtaccagctaggtaatagaagaaacgcccatcttataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG
     ||  |  |  ||   || | || |     |||      | |        |  |||   | ||   |    |  |||      || ||    | |   |||| ||||| |||||  ||||  |||||||||||||||||||||| || ||||| ||  |||||||||| |||||||||||||| |||||||| || || |
acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcat----gcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG

upper sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0062g00210.t01 (Vitis vinifera), 3'ss of exon 4
-aaatcatgaacagtagtaccactgtaccagctaggtaatagaagaaacgcccatcttataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG
 |  |    || |  |  |      |  ||    |||       || |      | | |  |||   |||     | ||    ||    | ||  |  ||| |||| |||||||||||||| || || ||||||||||||||||| || || || ||||||||||| ||||||||||||||||| || ||||| || || |
catcttgacaaaataaaaaatgaaatttcatgagggtggcctttgatat-ttggtatgaagagtctaattatgtgtaatcatcatggcatctgaatttcagGTTGCGAACATGATAAGGTTCCTAGTAGATAGCTACAACAAGCCGGTACCAGCAATTCTGGAGATTCCATCCAAGGACCATCCTTACGATCCTGCTCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211053903|gb|FL039087.1|FL039087
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCC
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTG-CCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCC
EST: gi|211335219|gb|FL322948.1|FL322948
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211062166|gb|FL359472.1|FL359472
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211140146|gb|FL356433.1|FL356433
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211282928|gb|FL312227.1|FL312227
EST:     AAGAATTTACTACGAGTGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCG
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTG-CCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCG
EST: gi|60339041|gb|DN206014.1|DN206014
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|8318853|gb|BE025493.1|BE025493
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|14243038|gb|BG840782.2|BG840782
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211099408|gb|FL366876.1|FL366876
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|37384202|gb|CF629158.1|CF629158
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|37390049|gb|CF632250.1|CF632250
EST:     GAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: GAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|16919403|gb|BM074173.1|BM074173
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211460459|gb|FL348754.1|FL348754
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         AT-GCCAACATGATAAGGTTTCTGGTGGAYAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211428176|gb|FL360597.1|FL360597
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTNGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAA
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATT-GCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAA
EST: gi|211101646|gb|FL354091.1|FL354091
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTT-CTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211149393|gb|FL319852.1|FL319852
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211013679|gb|FL365589.1|FL365589
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|5688738|gb|AI941753.1|AI941753
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211531489|gb|FL328404.1|FL328404
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         AT-GCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|16916798|gb|BM072995.1|BM072995
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211007902|gb|FL358956.1|FL358956
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211253323|gb|FL352234.1|FL352234
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|78543770|gb|DV621268.1|DV621268
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|213175109|gb|FM181707.1|FM181707
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|60359048|gb|DN226021.1|DN226021
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|60348716|gb|DN215689.1|DN215689
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211157235|gb|FL334268.1|FL334268
EST:     AAGAATTYACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGYGGATAGCTACAWCAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|12046517|gb|BF728656.1|BF728656
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|8318852|gb|BE025492.1|BE025492
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211094385|gb|FL362909.1|FL362909
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTKGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCC
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATT-GCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCC
EST: gi|211098079|gb|FL308902.1|FL308902
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|9742821|gb|BE518969.1|BE518969
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|45568036|gb|CK985870.1|CK985870
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|37387403|gb|CF630894.1|CF630894
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211397944|gb|FL165812.1|FL165812
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211435686|gb|FL350107.1|FL350107
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATGGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|33104271|gb|CF064231.1|CF064231
EST:     TTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGCTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: TTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|37387305|gb|CF630845.1|CF630845
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|84980633|gb|DW530982.1|DW530982
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|60336696|gb|DN203669.1|DN203669
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|40302858|gb|CK347245.1|CK347245
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|6695648|gb|AW288756.1|AW288756
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|15499545|gb|BI596058.1|BI596058
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|8383191|gb|BE056134.1|BE056134
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|60344408|gb|DN211381.1|DN211381
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211103208|gb|FL316249.1|FL316249
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|5608118|gb|AI901785.1|AI901785
EST:     AAGAATTTACTACGAGGGAGGATANTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211397947|gb|FL165815.1|FL165815
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211397949|gb|FL165817.1|FL165817
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|6696002|gb|AW289110.1|AW289110
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211455717|gb|FL365505.1|FL365505
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211397943|gb|FL165811.1|FL165811
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211222799|gb|FL343761.1|FL343761
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|32863646|gb|CF003328.1|CF003328
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|47962347|gb|CN845056.1|CN845056
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|15590273|gb|BI674889.1|BI674889
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|4886118|gb|AI677238.1|AI677238
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211397946|gb|FL165814.1|FL165814
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTWCTGGTGGATAGCTACAACAAGC
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGC
EST: gi|211497191|gb|FL310114.1|FL310114
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211397950|gb|FL165818.1|FL165818
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         AT-GCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|60342979|gb|DN209952.1|DN209952
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTTTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|26455833|gb|CA827416.1|CA827416
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211470674|gb|FL353020.1|FL353020
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|37377344|gb|CF625269.1|CF625269
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211059845|gb|FL039109.1|FL039109
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|14242887|gb|BG840218.2|BG840218
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|60342748|gb|DN209721.1|DN209721
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|108953748|gb|EC364871.1|EC364871
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211529121|gb|FL350184.1|FL350184
EST:     AAGAATTTACTACGAGGGATGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAGGGTTTCTGGT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGT
EST: gi|211541441|gb|FL362035.1|FL362035
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211274167|gb|FL331318.1|FL331318
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|32807111|gb|CD959345.1|CD959345
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATTAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACGAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|5871499|gb|AW017970.1|AW017970
EST:     GGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: GGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211419074|gb|FL312380.1|FL312380
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|40335019|gb|CK369089.1|CK369089
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATTAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|37392410|gb|CF633454.1|CF633454
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211053900|gb|FL039084.1|FL039084
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|37379190|gb|CF626327.1|CF626327
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|211316711|gb|FL359234.1|FL359234
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
EST: gi|60400047|gb|DN232854.1|DN232854
EST:     AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT
genomic: AAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 316

AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 821

AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 582

AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 766

AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtgaac ... tgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgcccatcttataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG
                                    tattaat  putative branch site (score: 766)
          ttataagttgtatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatcatgaacagtagtaccactgtaccagctaggtaatagaagaaacgcccatcttataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - catgaac
- - - - - - - - - - -ctgtacc
- - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg