1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtcacaggtggctcggtgtagttagccgcaagctgtttatgttcagttctgaataccaatataaggcagaagttgtgagtgacacttccctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGGTTTGGAGACTGTA
species | Zea mays |
transcript | GRMZM2G008209_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG TGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGAEST: gi|74243666|gb|DT651580.1|DT651580
genomic: GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCGgtgagtcctt ... ctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGA
EST: GTATTTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG TGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATCCCTTTCTCGAEST: gi|211537799|gb|FL107888.1|FL107888
genomic: GTATTTT-CTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCGgtgagtcctt ... ctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGA
EST: GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG TGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGAEST: gi|78110995|gb|DV529392.1|DV529392
genomic: GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCGgtgagtcctt ... ctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGA
EST: GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG TGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGAEST: gi|91871996|gb|EB401953.1|EB401953
genomic: GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCGgtgagtcctt ... ctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGA
EST: GTATTTTCTTAAGGGCGGCTACGCTGTCATCTTCATCCATCGCCG TGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGAT-CCTTTCTCGA
genomic: GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCGgtgagtcctt ... ctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGA
agttctgaataccaatataaggcagaagttgtgagtgacacttccctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGGTTTGGAGACTGTA
cacttccctctttgc CT-rich tract
aatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcacaggtggctcggtgtagttagccgcaagctgtttatgttcagttctgaataccaatataaggcagaagttgtgagtgacacttccctctttgcagTGGGAGCAAGCAGCCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGGTTTGGAGACTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - -caagctg
- - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - -ttctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagaag