1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtagcacatgaacaaaagtgcccttttaccagtttattatcagggtgcagttctggaagcaccatccaagatgactgagaaagctcattgtttctataaagaattcaagctcactgcagtttactttgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTCCTGGTTGCTTGATGCTTGTTTGGTTTAATTGTATAGCAAAATTAGGTG
species | Zea mays |
transcript | GRMZM2G007801_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|40334661|gb|CK368731.1|CK368731
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|71443463|gb|DR824513.1|DR824513
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TTTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTTTGTTGTAAGAAGAGCAGTGTGGTEST: gi|60395819|gb|DN228689.1|DN228689
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|31997660|gb|CD661702.1|CD661702
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|149003453|gb|EE038922.2|EE038922
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|149044937|gb|EE047739.2|EE047739
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|211093587|gb|FL440784.1|FL440784
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTG-TTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|74236710|gb|DT644624.1|DT644624
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|78121656|gb|DV540040.1|DV540040
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|60355663|gb|DN222636.1|DN222636
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|149088851|gb|EE177982.2|EE177982
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGGGTGGTEST: gi|71297800|gb|DR784854.1|DR784854
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|71442165|gb|DR823215.1|DR823215
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGTTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|37379673|gb|CF626583.1|CF626583
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|22473184|gb|BU037664.1|BU037664
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCCGTGTGGTEST: gi|24764451|gb|CA399615.1|CA399615
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|32791584|gb|CD943820.1|CD943820
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|78119580|gb|DV537964.1|DV537964
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TTTAAACGACATGGCATTTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTEST: gi|71326007|gb|DR799686.1|DR799686
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
EST: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCG GAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
genomic: TCTAAACGACATGGCATCTGCTTCGCCAAGGCCTCGCTCAACTCAGCGCGgtgagtagca ... tgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGT
agctcattgtttctataaagaattcaagctcactgcagtttactttgtgtaacagGAAAGGTGCATCGATGACAACCCGGTTCTGTTGTAAGAAGAGCAGTGTGGTCCTGGTTGCTTGATGCTTGTTTGGTTTAATTGTATAGCAAAATTAGGTG
agctcac putative branch site (score: 39)
tttacttt putative PPT
tttctataaagaatt TA-rich tract