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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattggctgttgtgttaaactcatttttagttaattatattgtataacgtgtagatcataatgaccttgcatcagttgaatctaattatgtcttgcgtagCTATTGAAGCAATCTTTACAAGCGAAAGAGTTGAGGACATTGTATCTATCTCCAAGGATTCAGTTCTTATCCTTGGTCAAG

Basic information

species Zea mays
transcript GRMZM2G007339_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007339_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g49930.1 (Oryza sativa), 3'ss of exon 3
-cattggctgttgtgttaaactcatttttagttaattatattgtataacgtgtagatcataa-tgaccttgcatcagttgaatctaattatgtcttgc-gtagCTATTGAAGCAATCTTTACAAGCGAAAGAGTTGAGGACATTGTATCTATCTCCAAGGATTCAGTTCTTATCCTTGGTCAAG
    | |      ||||    |  ||||||       ||  | |||  | | ||  |  ||| |  | ||   |||  |   |    || ||| ||   | |||||||||||||||||||||||| ||||  ||| ||||||||||  ||||||||||||||||||| ||||||||||||||||
aaggtagtgagcttgtttg-tttgtttttatcaggccatgatctat--catttatgttgtaactctctttctgtcatgttttttatcttgtgttttcttgcagCTATTGAAGCAATCTTTACAAGTGAAAAGGTTCAGGACATTGTGCCTATCTCCAAGGATTCAGTCCTTATCCTTGGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgtgtagatcataatgaccttgcatcagttgaatctaattatgtcttgcgtagCTATTGAAGCAATCTTTACAAGCGAAAGAGTTGAGGACATTGTATCTATCTCCAAGGATTCAGTTCTTATCCTTGGTCAAG
                                  atctaat  putative branch site (score: 3)
                              ttgaatctaattat  TA-rich tract