Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttttattagtgaaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC

Basic information

species Zea mays
transcript GRMZM2G007300_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
gtaagatttttattagtgaaagtt-gtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
|| || |||   | | || || ||  | ||| | ||  |   ||    |      || | |||    ||||| |||| ||  || ||||||||||| | ||||| |  || || || |||||||||||||| |||||||| ||||| | |||||||||||| || ||||||||||||||||| ||||||||
gtcagctttcc-tcattgtaacttcatgtttctgtaact---ccatgatccataattttaacaca--gcataatatt-ggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 3
gtaagatttttattagtgaaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
|| ||  |||| || |     ||  | ||  |||  |||   |    | |   |    ||  |  |   |   ||||  |       |||| ||| | ||||| | ||| || || || ||||||||||| |||||||| ||||||| |||||| ||||| || |||||||| ||||||||||| |||||
gttagtgttttttttgaatttgtgattttgctttgatttgaactacatgaaagt----gatgttttctgttcaatttttg-------cagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G04470.2 (Glycine max), 3'ss of exon 3
gtaagatttttattagtgaaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
            || ||     |  | |||||||   |||||     ||   |  |     || ||| ||  |  | |    | |  |||| ||  | |||||||  || || || || |||||||||||||| ||||| || |||| |||||||||||| ||||||||||| ||||| ||||| |||||
-----------gttggtttggctcatttttattt---ttatcttgctttgattgatacatgataatgaatgatgct-gttccatttgcagTGTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G14980.1 (Glycine max), 3'ss of exon 3
gtaagatttttattagtgaaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgc--cagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
|| || ||||| ||  | ||  ||||  ||  ||  |||    |     |  |     |  ||||   || ||   ||   || |    |||| ||| | ||||| | ||| || || || ||||||||||| |||||||| ||||||| |||||||||||| ||||||||||| ||||||||||| |||||
gttagtttttttttttttaat-ttgtgatt--ttgctttgataggaacaacatgaaa-gtgatcagtgatgtttcctgttcaatttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G40990.1 (Glycine max), 3'ss of exon 3
gtaagatttttattagtgaaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
            || ||   |     |||| |||  |    |  |  |||  |      |  |||   || || ||     || |  |||| ||| | |||||||  || || || || ||||||||||| |||||||| || |||| |||||||||||| ||||||||||| ||||| ||||| |||||
-----------gttggtctga--cacattttttttatcctgcttcgatta-atacatgaaattcaatgatgttgttc----aatttgcagTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G46460.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagatttttat-tagtgaaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatat---tatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
|| || | ||| | | |   | |   |  |||  |  || |||   | | |     |  |   |  || | ||     | | | |   ||| ||||||| | ||||| |  || ||||| |||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| || ||
gttagttctttctctcggttatgcgctcattagctcattgatcttgtttgagtagctaaggttttgtgaaaatgttcgtcttgtggtctgc-agTTTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G59300.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagatttttattagtgaaagttgtatttatttagtttatccgctgttatgtttt-----ctgacatcatgcata--ttatttggggaaatgc--cagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
|| || ||| | |   |     ||| ||      ||  |         ||||  |      | ||| |  || ||   ||| ||       | |  |||||||||| ||||| |  || || || |||||||||||||| || ||||| ||||| || ||||||||||| ||||| ||||||||||| ||||| |||||
gttagttttctctctatcggttttg-atcggggaaggattcaaaggaatatgaatagaagacagacgtt-tgaatggtttacttatatttgtcctgcagTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTCATAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 3'ss of exon 3
gtaagatttttattagtg----aaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
|| |  || ||||   |     | |  | ||| ||| |   ||   |  ||      | |||||    |    ||     |    |||   |||||||| | ||||| |  || || || || ||| | ||||| |||||||| || |||| ||| |||||||| ||||||||||||||||||||||| || ||
gttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGGACCCAAATGGCTATGAGCTTGCAAGTGAGCGTTGGACACCTGTCCACAC

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 3
gtaagatttttatt--agtgaaagt-tgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
||  | | ||| |   | || | || | |  || || | | |  ||  ||     |    ||| ||||  | |  |  |||    |||  |||||||| ||||||| |  || || || || ||||| ||||| |||||||| || |||| ||| |||||||| ||||||||||| ||||  ||  | |||||
gttggttgtttgtccaactgcatgtgtttgatttttgactcttaccattggagcatggcttgaaatca-acttggttcttgcatgaattacagTTTATCCAGATGGACGAGTATGCATATCAATTCTCCATCCTCCTGGTGAGGACCCAAATGGATATGAGCTTGCAAGTGAGCGCTGGATGCCAATCCATAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14548374|gb|BI096718.1|BI096718
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|116815280|gb|EC857946.1|EC857946
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365067|gb|FL116005.1|FL116005
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211372793|gb|FL445592.1|FL445592
EST:     CATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: CATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365064|gb|FL116002.1|FL116002
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|8273196|gb|BE012285.1|BE012285
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|60348385|gb|DN215358.1|DN215358
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|50334256|gb|CO529382.1|CO529382
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGCGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32858948|gb|CD998629.1|CD998629
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|67023819|gb|CO452568.1|CO452568
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|60359320|gb|DN226293.1|DN226293
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTTTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTTTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32863929|gb|CF003611.1|CF003611
EST:     CCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: CCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|60349828|gb|DN216801.1|DN216801
EST:     ACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: ACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|33093470|gb|CF053464.1|CF053464
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|116825457|gb|EC869181.1|EC869181
EST:     AAACAGCCCGCCATCAGCCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365065|gb|FL116003.1|FL116003
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365068|gb|FL116006.1|FL116006
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32910629|gb|CF015441.1|CF015441
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|60341687|gb|DN208660.1|DN208660
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32863732|gb|CF003414.1|CF003414
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|87153235|gb|DY398024.1|DY398024
EST:     ATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: ATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|19822690|gb|BQ048714.1|BQ048714
EST:     GCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: GCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|50334257|gb|CO529383.1|CO529383
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGCGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211530486|gb|FK952738.1|FK952738
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32909923|gb|CF014735.1|CF014735
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|6012446|gb|AW061883.1|AW061883
EST:     CAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTNTTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCNCCTGGTGAAG
genomic: CAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365070|gb|FL116008.1|FL116008
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|84980854|gb|DW531203.1|DW531203
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16920121|gb|BM074510.1|BM074510
EST:     AGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|6021313|gb|AW066241.1|AW066241
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|67022558|gb|CO451307.1|CO451307
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365074|gb|FL116012.1|FL116012
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32913813|gb|CF018625.1|CF018625
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGCATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|83278514|gb|DV942522.1|DV942522
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTTTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|84980470|gb|DW530819.1|DW530819
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|60342711|gb|DN209684.1|DN209684
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|84980533|gb|DW530882.1|DW530882
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365072|gb|FL116010.1|FL116010
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365075|gb|FL116013.1|FL116013
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32863930|gb|CF003612.1|CF003612
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|116814603|gb|EC857188.1|EC857188
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211533492|gb|FK952752.1|FK952752
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365077|gb|FL116015.1|FL116015
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|33096528|gb|CF056522.1|CF056522
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCGTCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211362422|gb|FL116000.1|FL116000
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18450509|gb|BM428787.1|BM428787
EST:     GATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: GATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|88753890|gb|DY538031.1|DY538031
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTTTATTCTTCTTCCCCCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|14203751|gb|BG837428.1|BG837428
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211530488|gb|FK952740.1|FK952740
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365073|gb|FL116011.1|FL116011
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211365066|gb|FL116004.1|FL116004
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|116824917|gb|EC868582.1|EC868582
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCAACTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttt ... gaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC
                   ttctgac  putative branch site (score: 2)
                                 atattattt  TA-rich tract