1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgaaacctgctgcatgaccttcttattctgaaggtcgtagctgatacaaaatcaataagaacttctagtgttggatatttatattattttgtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAGCTCCATGATCTCTTGAGCAAGCCATCTTTGACCGGAATACCATTACTA
species | Zea mays |
transcript | GRMZM2G007188_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|71306605|gb|DR789463.1|DR789463
genomic: TGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211135637|gb|FL266963.1|FL266963
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAEST: gi|12972938|gb|BG268231.1|BG268231
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCTGCAGATCGAGAAAACATGGCCATTGCAAAAGGGGAEST: gi|13178422|gb|BG349680.1|BG349680
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|76012951|gb|DT940121.1|DT940121
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211135642|gb|FL266968.1|FL266968
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: ATTCCGGAGCATGTGGGAGAGTATACTGC-GTGCGGTTTCTGGCA-TTGT GTATGTTGTTGACGCGGCAGATCGEST: gi|211136581|gb|FL266975.1|FL266975
genomic: ATTCCGGAGCATGTGGGAGAG-ATACTGCCGTGCGGTTTCTG-CAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCG
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211135639|gb|FL266965.1|FL266965
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCEST: gi|67012163|gb|CO440912.1|CO440912
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGC
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211136576|gb|FL266970.1|FL266970
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAAYYGT GTATGTTG---ACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|13178421|gb|BG349679.1|BG349679
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211135631|gb|FL266957.1|FL266957
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|13178595|gb|BG349853.1|BG349853
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|71306606|gb|DR789464.1|DR789464
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|76012952|gb|DT940122.1|DT940122
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211135634|gb|FL266960.1|FL266960
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGKTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|37421680|gb|CF648541.1|CF648541
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211135635|gb|FL266961.1|FL266961
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATNGCCATTGCAAAAGGGGAEST: gi|13178420|gb|BG349678.1|BG349678
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|71332505|gb|DR803215.1|DR803215
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|12972958|gb|BG268241.1|BG268241
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCTGCAGATCGAGAAAACATGGCCATTGCAAAAGGGGAEST: gi|71775459|gb|DR973337.1|DR973337
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: CCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|148969394|gb|EE020186.2|EE020186
genomic: CCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|83278732|gb|DV942740.1|DV942740
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCTGCAGATCGAGAAAACATGGCCATTGCAAAAGGGGAEST: gi|6539060|gb|AW225199.1|AW225199
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCTGCAGATCGAGAAAACATGGCCATTGCAAAAGGGGAEST: gi|16377996|gb|BI992228.1|BI992228
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAEST: gi|211473094|gb|FL459189.1|FL459189
genomic: AGATTCCGGAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
EST: GAGAGATACTGCCGTGCGGTTTCTGCAATTGT GTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
genomic: GAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgccttt ... gtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGA
acaaaatcaataagaacttctagtgttggatatttatattattttgtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAGCTCCATGATCTCTTGAGCAAGCCATCTTTGACCGGAATACCATTACTA
ttttgtttct CT-rich tract
ttggatatttatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaacctgctgcatgaccttcttattctgaaggtcgtagctgatacaaaatcaataagaacttctagtgttggatatttatattattttgtttctgcagGTATGTTGTTGACGCGGCAGATCGTGAAAACATGGCCATTGCAAAAGGGGAGCTCCATGATCTCTTGAGCAAGCCATCTTTGACCGGAATACCATTACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - -cctgctg
- - - - - - catgacc
- - - - - - - - - - - - -ttctgaa
- - - - - - - - - - - - - - - - - - gtagctg
- - - - - - - - - - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaac