1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttttaacgttttaccgttttaataaccatgcatatgtgggtagtgttgtacttcagttgacacagtgatttcctatagctgatataaattgcatctcagGATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAACAGTATTGCTTATCAAGGTGGATATCATGTTGGTGCCAAAGGCCTGTAT
species | Zea mays |
transcript | GRMZM2G006117_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGCCAAGGAGCTCAAGGAAAAGATAGAGGACGAATACCGAGTGAACAT GATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAAEST: gi|149106813|gb|EE188710.2|EE188710
genomic: GAAGCCAAGGAGCTCAAGGAAAAGATAGAGGACGAATACCGAGTGAACATgtaaggacta ... tgcatctcagGATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAA
EST: GAAGCCAAGGAGCTCAAGGAAAAGATAGAGGACGAATACCGAGTGAACAT GATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAAEST: gi|76018555|gb|DT945725.1|DT945725
genomic: GAAGCCAAGGAGCTCAAGGAAAAGATAGAGGACGAATACCGAGTGAACATgtaaggacta ... tgcatctcagGATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAA
EST: GAAGCCAAGGAGCTCAAGGAAAAGATAGAGGACGAATACCGAGTGAACAT GATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAA
genomic: GAAGCCAAGGAGCTCAAGGAAAAGATAGAGGACGAATACCGAGTGAACATgtaaggacta ... tgcatctcagGATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAA
gttgtacttcagttgacacagtgatttcctatagctgatataaattgcatctcagGATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAACAGTATTGCTTATCAAGGTGGATATCATGTTGGTGCCAAAGGCCTGTAT
agctgat putative branch site (score: 377)
tgatataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttaacgttttaccgttttaataaccatgcatatgtgggtagtgttgtacttcagttgacacagtgatttcctatagctgatataaattgcatctcagGATCCTTGACAACCTCCCGCTAGTTGTTCCTGTTACAAGGCAAGATAAGAACAGTATTGCTTATCAAGGTGGATATCATGTTGGTGCCAAAGGCCTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgata